Analysis of interatomic Contacts of Structural Units in PDB entry:
6XLD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XLD entry

There are 3 chains in PDB entry 6XLD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 675
B	GLY 3	ASP 675
C	ASN 212	LEU 350

There are 53 helices in PDB entry 6XLD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	19	Right-handed alpha
Helix 2	AA2	A	29	48	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed 310
Helix 4	AA4	A	87	92	Right-handed alpha
Helix 5	AA5	A	99	107	Right-handed alpha
Helix 6	AA6	A	123	129	Right-handed 310
Helix 7	AA7	A	179	185	Right-handed 310
Helix 8	AA8	A	186	197	Right-handed alpha
Helix 9	AA9	A	276	280	Right-handed 310
Helix 10	AB1	A	281	293	Right-handed alpha
Helix 11	AB2	A	384	405	Right-handed alpha
Helix 12	AB3	A	406	415	Right-handed alpha
Helix 13	AB4	A	417	428	Right-handed alpha
Helix 14	AB5	A	431	437	Right-handed alpha
Helix 15	AB6	A	453	459	Right-handed alpha
Helix 16	AB7	A	474	480	Right-handed alpha
Helix 17	AB8	A	484	490	Right-handed alpha
Helix 18	AB9	A	501	510	Right-handed alpha
Helix 19	AC1	A	529	541	Right-handed alpha
Helix 20	AC2	A	543	555	Right-handed alpha
Helix 21	AC3	A	556	558	Right-handed 310
Helix 22	AC4	A	582	590	Right-handed alpha
Helix 23	AC5	A	615	627	Right-handed alpha
Helix 24	AC6	A	632	651	Right-handed alpha
Helix 25	AC7	A	656	672	Right-handed alpha
Helix 26	AC8	B	11	22	Right-handed alpha
Helix 27	AC9	B	29	50	Right-handed alpha
Helix 28	AD1	B	52	57	Right-handed 310
Helix 29	AD2	B	99	108	Right-handed alpha
Helix 30	AD3	B	123	129	Right-handed 310
Helix 31	AD4	B	181	186	Right-handed 310
Helix 32	AD5	B	187	198	Right-handed alpha
Helix 33	AD6	B	276	280	Right-handed 310
Helix 34	AD7	B	281	293	Right-handed alpha
Helix 35	AD8	B	383	405	Right-handed alpha
Helix 36	AD9	B	407	417	Right-handed alpha
Helix 37	AE1	B	417	428	Right-handed alpha
Helix 38	AE2	B	431	437	Right-handed alpha
Helix 39	AE3	B	453	459	Right-handed alpha
Helix 40	AE4	B	474	480	Right-handed alpha
Helix 41	AE5	B	483	490	Right-handed alpha
Helix 42	AE6	B	501	510	Right-handed alpha
Helix 43	AE7	B	529	541	Right-handed alpha
Helix 44	AE8	B	543	555	Right-handed alpha
Helix 45	AE9	B	556	558	Right-handed 310
Helix 46	AF1	B	582	590	Right-handed alpha
Helix 47	AF2	B	615	627	Right-handed alpha
Helix 48	AF3	B	632	651	Right-handed alpha
Helix 49	AF4	B	656	672	Right-handed alpha
Helix 50	AF5	C	225	233	Right-handed alpha
Helix 51	AF6	C	235	244	Right-handed alpha
Helix 52	AF7	C	326	336	Right-handed alpha
Helix 53	AF8	C	337	344	Right-handed alpha

There are 13 sheets in PDB entry 6XLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	145	150	anti-parallel
Strand 4	B	131	139	anti-parallel
Strand 5	B	170	177	anti-parallel
Strand 6	B	74	79	anti-parallel
Strand 7	B	64	69	anti-parallel
Strand 8	B	205	209	parallel
Strand 9	B	262	265	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	B	95	96	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	205	209	anti-parallel
Strand 3	A	64	69	parallel
Strand 4	A	74	79	anti-parallel
Strand 5	A	170	177	anti-parallel
Strand 6	A	131	139	anti-parallel
Strand 7	A	145	150	anti-parallel
Strand 8	A	155	160	anti-parallel
Strand 9	B	4	7	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	B	9	10	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	312	319	anti-parallel
Strand 3	A	362	367	anti-parallel
Strand 4	A	337	341	parallel
Strand 5	A	345	347	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	440	443	anti-parallel
Strand 3	A	494	497	anti-parallel
Strand 4	A	466	471	parallel
Strand 5	A	515	519	parallel
Strand 6	A	511	512	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	608	611	parallel
Strand 3	A	572	575	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	307	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	362	367	anti-parallel
Strand 4	B	337	341	parallel
Strand 5	B	344	347	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	440	443	anti-parallel
Strand 3	B	494	497	anti-parallel
Strand 4	B	466	471	parallel
Strand 5	B	515	519	parallel
Strand 6	B	511	512	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	563	first strand
Strand 2	B	607	611	parallel
Strand 3	B	572	576	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	314	321	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	268	275	anti-parallel
Strand 6	C	259	263	anti-parallel
Strand 7	C	246	248	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	314	321	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	268	275	anti-parallel
Strand 6	C	286	287	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	310	312	anti-parallel
Strand 3	C	304	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XLD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XLD