Analysis of interatomic Contacts of Structural Units in PDB entry:
6XLE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XLE entry

There are 4 chains in PDB entry 6XLE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 675
B	GLY 3	ASP 675
C	PRO 206	LEU 350
D	PRO 206	LEU 350

There are 60 helices in PDB entry 6XLE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	19	Right-handed alpha
Helix 2	AA2	A	29	50	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed 310
Helix 4	AA4	A	87	92	Right-handed alpha
Helix 5	AA5	A	99	107	Right-handed alpha
Helix 6	AA6	A	123	129	Right-handed 310
Helix 7	AA7	A	179	185	Right-handed 310
Helix 8	AA8	A	186	197	Right-handed alpha
Helix 9	AA9	A	276	280	Right-handed 310
Helix 10	AB1	A	281	293	Right-handed alpha
Helix 11	AB2	A	384	405	Right-handed alpha
Helix 12	AB3	A	406	415	Right-handed alpha
Helix 13	AB4	A	417	428	Right-handed alpha
Helix 14	AB5	A	431	437	Right-handed alpha
Helix 15	AB6	A	453	459	Right-handed alpha
Helix 16	AB7	A	474	480	Right-handed alpha
Helix 17	AB8	A	484	490	Right-handed alpha
Helix 18	AB9	A	501	510	Right-handed alpha
Helix 19	AC1	A	529	541	Right-handed alpha
Helix 20	AC2	A	543	555	Right-handed alpha
Helix 21	AC3	A	556	558	Right-handed 310
Helix 22	AC4	A	582	590	Right-handed alpha
Helix 23	AC5	A	615	627	Right-handed alpha
Helix 24	AC6	A	632	651	Right-handed alpha
Helix 25	AC7	A	656	672	Right-handed alpha
Helix 26	AC8	B	11	22	Right-handed alpha
Helix 27	AC9	B	29	50	Right-handed alpha
Helix 28	AD1	B	52	57	Right-handed 310
Helix 29	AD2	B	87	92	Right-handed alpha
Helix 30	AD3	B	99	108	Right-handed alpha
Helix 31	AD4	B	122	129	Right-handed 310
Helix 32	AD5	B	181	185	Right-handed 310
Helix 33	AD6	B	186	198	Right-handed alpha
Helix 34	AD7	B	276	280	Right-handed 310
Helix 35	AD8	B	281	293	Right-handed alpha
Helix 36	AD9	B	383	405	Right-handed alpha
Helix 37	AE1	B	407	417	Right-handed alpha
Helix 38	AE2	B	417	428	Right-handed alpha
Helix 39	AE3	B	431	437	Right-handed alpha
Helix 40	AE4	B	453	459	Right-handed alpha
Helix 41	AE5	B	474	480	Right-handed alpha
Helix 42	AE6	B	483	490	Right-handed alpha
Helix 43	AE7	B	501	510	Right-handed alpha
Helix 44	AE8	B	529	541	Right-handed alpha
Helix 45	AE9	B	543	555	Right-handed alpha
Helix 46	AF1	B	556	558	Right-handed 310
Helix 47	AF2	B	582	590	Right-handed alpha
Helix 48	AF3	B	615	627	Right-handed alpha
Helix 49	AF4	B	632	651	Right-handed alpha
Helix 50	AF5	B	656	672	Right-handed alpha
Helix 51	AF6	C	225	233	Right-handed alpha
Helix 52	AF7	C	235	244	Right-handed alpha
Helix 53	AF8	C	323	325	Right-handed 310
Helix 54	AF9	C	326	336	Right-handed alpha
Helix 55	AG1	C	337	344	Right-handed alpha
Helix 56	AG2	D	225	233	Right-handed alpha
Helix 57	AG3	D	235	244	Right-handed alpha
Helix 58	AG4	D	324	331	Right-handed alpha
Helix 59	AG5	D	331	336	Right-handed alpha
Helix 60	AG6	D	336	344	Right-handed alpha

There are 14 sheets in PDB entry 6XLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	145	150	anti-parallel
Strand 4	B	131	139	anti-parallel
Strand 5	B	170	177	anti-parallel
Strand 6	B	74	79	anti-parallel
Strand 7	B	64	69	anti-parallel
Strand 8	B	205	209	parallel
Strand 9	B	262	265	anti-parallel
Strand 10	D	207	208	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	B	95	96	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	145	150	anti-parallel
Strand 4	A	131	139	anti-parallel
Strand 5	A	170	177	anti-parallel
Strand 6	A	74	79	anti-parallel
Strand 7	A	64	69	anti-parallel
Strand 8	A	205	209	parallel
Strand 9	A	262	265	anti-parallel
Strand 10	C	207	208	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	B	9	10	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	308	first strand
Strand 2	A	312	319	anti-parallel
Strand 3	A	362	367	anti-parallel
Strand 4	A	337	341	parallel
Strand 5	A	345	347	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	440	443	anti-parallel
Strand 3	A	494	497	anti-parallel
Strand 4	A	466	471	parallel
Strand 5	A	515	519	parallel
Strand 6	A	511	512	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	608	611	parallel
Strand 3	A	572	575	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	307	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	362	367	anti-parallel
Strand 4	B	337	341	parallel
Strand 5	B	344	347	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	440	443	anti-parallel
Strand 3	B	494	497	anti-parallel
Strand 4	B	466	471	parallel
Strand 5	B	515	519	parallel
Strand 6	B	511	512	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	563	first strand
Strand 2	B	607	611	parallel
Strand 3	B	572	576	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	310	321	anti-parallel
Strand 3	C	297	305	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	268	275	anti-parallel
Strand 6	C	259	263	anti-parallel
Strand 7	C	246	248	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	310	321	anti-parallel
Strand 3	C	297	305	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	268	275	anti-parallel
Strand 6	C	286	287	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	218	first strand
Strand 2	D	310	321	anti-parallel
Strand 3	D	297	305	anti-parallel
Strand 4	D	280	283	anti-parallel
Strand 5	D	268	275	anti-parallel
Strand 6	D	259	263	anti-parallel
Strand 7	D	246	248	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	310	321	anti-parallel
Strand 3	D	297	305	anti-parallel
Strand 4	D	280	283	anti-parallel
Strand 5	D	268	275	anti-parallel
Strand 6	D	286	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XLE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XLE