Analysis of interatomic Contacts of Structural Units in PDB entry:
6XLH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XLH entry

There are 4 chains in PDB entry 6XLH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	ASP 675
B	GLY 3	ASP 675
C	MET 1	LEU 350
D	PRO 206	LEU 350

There are 64 helices in PDB entry 6XLH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	21	Right-handed alpha
Helix 2	AA2	A	28	50	Right-handed alpha
Helix 3	AA3	A	52	57	Right-handed 310
Helix 4	AA4	A	85	92	Right-handed alpha
Helix 5	AA5	A	99	106	Right-handed alpha
Helix 6	AA6	A	123	129	Right-handed 310
Helix 7	AA7	A	181	185	Right-handed 310
Helix 8	AA8	A	186	197	Right-handed alpha
Helix 9	AA9	A	281	293	Right-handed alpha
Helix 10	AB1	A	384	405	Right-handed alpha
Helix 11	AB2	A	406	417	Right-handed alpha
Helix 12	AB3	A	417	428	Right-handed alpha
Helix 13	AB4	A	431	437	Right-handed alpha
Helix 14	AB5	A	453	459	Right-handed alpha
Helix 15	AB6	A	474	480	Right-handed alpha
Helix 16	AB7	A	483	490	Right-handed alpha
Helix 17	AB8	A	500	510	Right-handed alpha
Helix 18	AB9	A	529	543	Right-handed alpha
Helix 19	AC1	A	543	555	Right-handed alpha
Helix 20	AC2	A	556	558	Right-handed 310
Helix 21	AC3	A	582	590	Right-handed alpha
Helix 22	AC4	A	615	627	Right-handed alpha
Helix 23	AC5	A	632	651	Right-handed alpha
Helix 24	AC6	A	656	672	Right-handed alpha
Helix 25	AC7	B	11	22	Right-handed alpha
Helix 26	AC8	B	28	50	Right-handed alpha
Helix 27	AC9	B	52	57	Right-handed 310
Helix 28	AD1	B	85	92	Right-handed alpha
Helix 29	AD2	B	99	108	Right-handed alpha
Helix 30	AD3	B	123	129	Right-handed 310
Helix 31	AD4	B	181	185	Right-handed 310
Helix 32	AD5	B	186	195	Right-handed alpha
Helix 33	AD6	B	281	293	Right-handed alpha
Helix 34	AD7	B	384	406	Right-handed alpha
Helix 35	AD8	B	407	417	Right-handed alpha
Helix 36	AD9	B	417	428	Right-handed alpha
Helix 37	AE1	B	431	437	Right-handed alpha
Helix 38	AE2	B	453	459	Right-handed alpha
Helix 39	AE3	B	474	480	Right-handed alpha
Helix 40	AE4	B	483	490	Right-handed alpha
Helix 41	AE5	B	501	510	Right-handed alpha
Helix 42	AE6	B	529	543	Right-handed alpha
Helix 43	AE7	B	543	555	Right-handed alpha
Helix 44	AE8	B	556	558	Right-handed 310
Helix 45	AE9	B	582	590	Right-handed alpha
Helix 46	AF1	B	615	627	Right-handed alpha
Helix 47	AF2	B	632	651	Right-handed alpha
Helix 48	AF3	B	656	672	Right-handed alpha
Helix 49	AF4	C	5	9	Right-handed 310
Helix 50	AF5	C	16	28	Right-handed alpha
Helix 51	AF6	C	117	121	Right-handed 310
Helix 52	AF7	C	122	128	Right-handed alpha
Helix 53	AF8	C	130	150	Right-handed alpha
Helix 54	AF9	C	157	161	Right-handed 310
Helix 55	AG1	C	163	170	Right-handed alpha
Helix 56	AG2	C	225	233	Right-handed alpha
Helix 57	AG3	C	235	244	Right-handed alpha
Helix 58	AG4	C	324	336	Right-handed alpha
Helix 59	AG5	C	336	344	Right-handed alpha
Helix 60	AG6	D	225	233	Right-handed alpha
Helix 61	AG7	D	235	244	Right-handed alpha
Helix 62	AG8	D	324	331	Right-handed alpha
Helix 63	AG9	D	331	336	Right-handed alpha
Helix 64	AH1	D	336	344	Right-handed alpha

There are 16 sheets in PDB entry 6XLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	145	150	anti-parallel
Strand 4	B	131	139	anti-parallel
Strand 5	B	170	177	anti-parallel
Strand 6	B	74	79	anti-parallel
Strand 7	B	64	69	anti-parallel
Strand 8	B	205	209	parallel
Strand 9	B	262	265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	B	95	96	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	205	209	anti-parallel
Strand 3	A	64	69	parallel
Strand 4	A	74	79	anti-parallel
Strand 5	A	170	177	anti-parallel
Strand 6	A	131	139	anti-parallel
Strand 7	A	145	150	anti-parallel
Strand 8	A	155	160	anti-parallel
Strand 9	B	4	7	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	B	9	10	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	307	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	362	367	anti-parallel
Strand 4	A	337	341	parallel
Strand 5	A	344	347	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	440	443	anti-parallel
Strand 3	A	494	497	anti-parallel
Strand 4	A	466	471	parallel
Strand 5	A	516	519	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	563	first strand
Strand 2	A	608	611	parallel
Strand 3	A	572	575	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	307	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	362	366	anti-parallel
Strand 4	B	337	341	parallel
Strand 5	B	344	347	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	440	443	anti-parallel
Strand 3	B	494	497	anti-parallel
Strand 4	B	466	471	parallel
Strand 5	B	516	519	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	563	first strand
Strand 2	B	607	611	parallel
Strand 3	B	572	576	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	15	first strand
Strand 2	C	55	58	anti-parallel
Strand 3	C	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	41	53	anti-parallel
Strand 3	C	68	79	anti-parallel
Strand 4	C	87	94	anti-parallel
Strand 5	C	110	113	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	310	321	anti-parallel
Strand 3	C	297	305	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	268	275	anti-parallel
Strand 6	C	259	263	anti-parallel
Strand 7	C	246	248	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	310	321	anti-parallel
Strand 3	C	297	305	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	268	275	anti-parallel
Strand 6	C	286	287	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	218	first strand
Strand 2	D	314	321	anti-parallel
Strand 3	D	296	301	anti-parallel
Strand 4	D	280	287	anti-parallel
Strand 5	D	268	275	anti-parallel
Strand 6	D	259	263	anti-parallel
Strand 7	D	246	248	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	310	312	anti-parallel
Strand 3	D	304	305	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XLH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XLH