Analysis of interatomic Contacts of Structural Units in PDB entry:
6XMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XMD entry

There are 2 chains in PDB entry 6XMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 609
B
 GLY -1THR 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6XMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
49 55Right-handed alpha
Helix 4
AA4
A
84 97Right-handed alpha
Helix 5
AA5
A
112 123Right-handed alpha
Helix 6
AA6
A
166 185Right-handed alpha
Helix 7
AA7
A
196 213Right-handed alpha
Helix 8
AA8
A
234 236Right-handed 310
Helix 9
AA9
A
237 242Right-handed alpha
Helix 10
AB1
A
246 255Right-handed alpha
Helix 11
AB2
A
271 274Right-handed 310
Helix 12
AB3
A
284 291Right-handed alpha
Helix 13
AB4
A
294 314Right-handed alpha
Helix 14
AB5
A
315 319Right-handed 310
Helix 15
AB6
A
321 360Right-handed alpha
Helix 16
AB7
A
361 374Right-handed alpha
Helix 17
AB8
A
376 389Right-handed alpha
Helix 18
AB9
A
394 410Right-handed alpha
Helix 19
AC1
A
416 426Right-handed alpha
Helix 20
AC2
A
431 447Right-handed alpha
Helix 21
AC3
A
500 512Right-handed alpha
Helix 22
AC4
A
559 573Right-handed alpha
Helix 23
AC5
A
587 601Right-handed alpha
Helix 24
AC6
B
5 12Right-handed alpha
Helix 25
AC7
B
83 108Right-handed alpha
Helix 26
AC8
B
123 160Right-handed alpha
Helix 27
AC9
B
164 200Right-handed alpha
Helix 28
AD1
B
253 283Right-handed alpha
Helix 29
AD2
B
290 293Right-handed 310
Helix 30
AD3
B
294 302Right-handed alpha
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There are 4 sheets in PDB entry 6XMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
32 36parallel
Strand 3
A
76 81parallel
Strand 4
A
102 107parallel
Strand 5
A
128 134parallel
Strand 6
B
2 4anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
145 147anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
227 232parallel
Strand 4
A
548 555parallel
Strand 5
A
576 582parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
261 263anti-parallel
Strand 3
A
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il