Analysis of interatomic Contacts of Structural Units in PDB entry:
6XMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XMG entry

There are 3 chains in PDB entry 6XMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14PRO 767
C
 G 1 A 136
E
 U 1 U 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6XMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 65Right-handed alpha
Helix 2
AA2
A
66 68Right-handed 310
Helix 3
AA3
A
78 87Right-handed alpha
Helix 4
AA4
A
87 92Right-handed alpha
Helix 5
AA5
A
99 112Right-handed alpha
Helix 6
AA6
A
126 138Right-handed alpha
Helix 7
AA7
A
144 153Right-handed alpha
Helix 8
AA8
A
156 175Right-handed alpha
Helix 9
AA9
A
175 200Right-handed alpha
Helix 10
AB1
A
206 214Right-handed alpha
Helix 11
AB2
A
230 237Right-handed alpha
Helix 12
AB3
A
242 249Right-handed alpha
Helix 13
AB4
A
336 347Right-handed alpha
Helix 14
AB5
A
356 363Right-handed alpha
Helix 15
AB6
A
364 366Right-handed 310
Helix 16
AB7
A
430 434Right-handed 310
Helix 17
AB8
A
466 476Right-handed alpha
Helix 18
AB9
A
480 482Right-handed 310
Helix 19
AC1
A
483 499Right-handed alpha
Helix 20
AC2
A
502 507Right-handed alpha
Helix 21
AC3
A
569 595Right-handed alpha
Helix 22
AC4
A
619 644Right-handed alpha
Helix 23
AC5
A
680 695Right-handed alpha
Helix 24
AC6
A
722 731Right-handed alpha
Helix 25
AC7
A
743 757Right-handed alpha
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There are 4 sheets in PDB entry 6XMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
436 441anti-parallel
Strand 4
A
387 389anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
416 420anti-parallel
Strand 3
A
402 405anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 511first strand
Strand 2
A
651 654parallel
Strand 3
A
699 701parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 524first strand
Strand 2
A
529 534anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il