Analysis of interatomic Contacts of Structural Units in PDB entry:
6XMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XMI entry

There are 4 chains in PDB entry 6XMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	GLY 214
B	GLU 220	LYS 450
D	ASP 1	GLY 214
E	GLU 220	PRO 233

There are 21 helices in PDB entry 6XMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	123	129	Right-handed alpha
Helix 3	AA3	A	185	191	Right-handed alpha
Helix 4	AA4	B	293	295	Right-handed 310
Helix 5	AA5	B	306	310	Right-handed 310
Helix 6	AA6	B	392	394	Right-handed 310
Helix 7	AA7	B	423	425	Right-handed 310
Helix 8	AA8	B	437	440	Right-handed 310
Helix 9	AA9	D	79	83	Right-handed 310
Helix 10	AB1	D	123	129	Right-handed alpha
Helix 11	AB2	D	185	191	Right-handed alpha
Helix 12	AB3	E	293	295	Right-handed 310
Helix 13	AB4	E	306	310	Right-handed 310
Helix 14	AB5	E	392	394	Right-handed 310
Helix 15	AB6	E	423	425	Right-handed 310
Helix 16	AB7	E	437	440	Right-handed 310
Helix 17	AB8	F	3	8	Right-handed alpha
Helix 18	AB9	F	11	32	Right-handed alpha
Helix 19	AC1	C	3	8	Right-handed alpha
Helix 20	AC2	C	11	23	Right-handed alpha
Helix 21	AC3	C	25	29	Right-handed 310

There are 24 sheets in PDB entry 6XMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	104	108	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	104	108	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	99	100	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	131	141	anti-parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	161	165	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	147	152	anti-parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	207	212	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	226	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	297	302	anti-parallel
Strand 4	B	287	292	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	343	347	parallel
Strand 3	B	311	319	anti-parallel
Strand 4	B	251	258	anti-parallel
Strand 5	B	264	270	anti-parallel
Strand 6	B	277	279	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	343	347	parallel
Strand 3	B	311	319	anti-parallel
Strand 4	B	338	339	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	326	first strand
Strand 2	B	330	333	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	360	first strand
Strand 2	B	371	381	anti-parallel
Strand 3	B	412	421	anti-parallel
Strand 4	B	399	401	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	360	first strand
Strand 2	B	371	381	anti-parallel
Strand 3	B	412	421	anti-parallel
Strand 4	B	405	406	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	431	436	anti-parallel
Strand 3	B	441	446	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	104	109	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	104	109	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	99	100	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	131	141	anti-parallel
Strand 3	D	175	184	anti-parallel
Strand 4	D	161	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	147	152	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	207	212	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	226	first strand
Strand 2	E	237	244	anti-parallel
Strand 3	E	297	302	anti-parallel
Strand 4	E	287	292	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	231	first strand
Strand 2	E	343	347	parallel
Strand 3	E	311	319	anti-parallel
Strand 4	E	251	258	anti-parallel
Strand 5	E	264	270	anti-parallel
Strand 6	E	277	279	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	231	first strand
Strand 2	E	343	347	parallel
Strand 3	E	311	319	anti-parallel
Strand 4	E	338	339	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	323	326	first strand
Strand 2	E	330	333	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	360	first strand
Strand 2	E	371	381	anti-parallel
Strand 3	E	412	421	anti-parallel
Strand 4	E	399	401	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	360	first strand
Strand 2	E	371	381	anti-parallel
Strand 3	E	412	421	anti-parallel
Strand 4	E	405	406	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	390	first strand
Strand 2	E	431	436	anti-parallel
Strand 3	E	441	446	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XMI