Analysis of interatomic Contacts of Structural Units in PDB entry:
6XMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XMS entry

There is 1 chain in PDB entry 6XMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4LYS 1211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 6XMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
32 44Right-handed alpha
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
75 77Right-handed 310
Helix 5
AA5
A
79 86Right-handed alpha
Helix 6
AA6
A
156 163Right-handed alpha
Helix 7
AA7
A
170 178Right-handed alpha
Helix 8
AA8
A
188 197Right-handed alpha
Helix 9
AA9
A
199 215Right-handed alpha
Helix 10
AB1
A
217 247Right-handed alpha
Helix 11
AB2
A
248 250Right-handed 310
Helix 12
AB3
A
304 309Right-handed alpha
Helix 13
AB4
A
332 336Right-handed 310
Helix 14
AB5
A
372 375Right-handed 310
Helix 15
AB6
A
376 387Right-handed alpha
Helix 16
AB7
A
396 424Right-handed alpha
Helix 17
AB8
A
431 443Right-handed alpha
Helix 18
AB9
A
449 464Right-handed alpha
Helix 19
AC1
A
471 479Right-handed 310
Helix 20
AC2
A
522 532Right-handed alpha
Helix 21
AC3
A
546 557Right-handed alpha
Helix 22
AC4
A
606 612Right-handed alpha
Helix 23
AC5
A
620 630Right-handed alpha
Helix 24
AC6
A
655 660Right-handed alpha
Helix 25
AC7
A
678 689Right-handed alpha
Helix 26
AC8
A
700 712Right-handed alpha
Helix 27
AC9
A
753 762Right-handed alpha
Helix 28
AD1
A
767 773Right-handed alpha
Helix 29
AD2
A
778 783Right-handed alpha
Helix 30
AD3
A
793 807Right-handed alpha
Helix 31
AD4
A
820 827Right-handed alpha
Helix 32
AD5
A
837 851Right-handed alpha
Helix 33
AD6
A
954 958Right-handed 310
Helix 34
AD7
A
972 1012Right-handed alpha
Helix 35
AD8
A
1018 1036Right-handed alpha
Helix 36
AD9
A
1055 1084Right-handed alpha
Helix 37
AE1
A
1099 1120Right-handed alpha
Helix 38
AE2
A
1133 1152Right-handed alpha
Helix 39
AE3
A
1155 1162Right-handed alpha
Helix 40
AE4
A
1168 1198Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 6XMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
143 145parallel
Strand 3
A
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
123 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
133 135anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
277 280anti-parallel
Strand 4
A
365 371anti-parallel
Strand 5
A
292 297anti-parallel
Strand 6
A
338 339anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 303first strand
Strand 2
A
344 349anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 469first strand
Strand 2
A
964 966anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 745first strand
Strand 2
A
732 736anti-parallel
Strand 3
A
719 723anti-parallel
Strand 4
A
764 766parallel
Strand 5
A
788 790parallel
Strand 6
A
692 696parallel
Strand 7
A
483 486parallel
Strand 8
A
812 814parallel
Strand 9
A
829 831parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
498 503anti-parallel
Strand 3
A
664 672anti-parallel
Strand 4
A
634 642anti-parallel
Strand 5
A
599 605anti-parallel
Strand 6
A
588 594anti-parallel
Strand 7
A
575 579anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
543 544anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il