Analysis of interatomic Contacts of Structural Units in PDB entry:
6XNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XNP entry

There are 2 chains in PDB entry 6XNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 154GLU 336
B
 SER 154GLU 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6XNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 167Right-handed alpha
Helix 2
AA2
A
167 172Right-handed alpha
Helix 3
AA3
A
174 186Right-handed alpha
Helix 4
AA4
A
211 216Right-handed alpha
Helix 5
AA5
A
264 271Right-handed alpha
Helix 6
AA6
A
280 302Right-handed alpha
Helix 7
AA7
A
324 334Right-handed alpha
Helix 8
AA8
B
155 167Right-handed alpha
Helix 9
AA9
B
167 184Right-handed alpha
Helix 10
AB1
B
185 192Right-handed alpha
Helix 11
AB2
B
211 216Right-handed alpha
Helix 12
AB3
B
264 271Right-handed alpha
Helix 13
AB4
B
279 302Right-handed alpha
Helix 14
AB5
B
319 323Right-handed 310
Helix 15
AB6
B
324 337Right-handed alpha
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There are 4 sheets in PDB entry 6XNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
198 203parallel
Strand 5
A
309 314parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
235 240anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 224first strand
Strand 2
B
243 249anti-parallel
Strand 3
B
252 261anti-parallel
Strand 4
B
198 203parallel
Strand 5
B
309 314parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
235 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il