Analysis of interatomic Contacts of Structural Units in PDB entry:
6XNY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XNY entry

There are 10 chains in PDB entry 6XNY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 459	ALA 1008
B	MET 1	CYS 350
C	SER 460	ASN 1007
D	MET 1	SER 351
x	G 31	G 65
y	A 24	G 54
I	C 3	C 16
J	C 3	C 16
L	C 17	T 28
M	C 17	C 32

There are 55 helices in PDB entry 6XNY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	463	474	Right-handed alpha
Helix 2	AA2	A	477	492	Right-handed alpha
Helix 3	AA3	A	499	511	Right-handed alpha
Helix 4	AA4	A	558	581	Right-handed alpha
Helix 5	AA5	A	664	683	Right-handed alpha
Helix 6	AA6	A	708	716	Right-handed alpha
Helix 7	AA7	A	733	740	Right-handed alpha
Helix 8	AA8	A	749	763	Right-handed alpha
Helix 9	AA9	A	768	777	Right-handed alpha
Helix 10	AB1	A	792	814	Right-handed alpha
Helix 11	AB2	A	822	840	Right-handed alpha
Helix 12	AB3	A	850	858	Right-handed alpha
Helix 13	AB4	A	859	868	Right-handed alpha
Helix 14	AB5	A	872	895	Right-handed alpha
Helix 15	AB6	A	897	902	Right-handed alpha
Helix 16	AB7	A	902	907	Right-handed alpha
Helix 17	AB8	A	908	923	Right-handed alpha
Helix 18	AB9	A	933	942	Right-handed alpha
Helix 19	AC1	A	942	951	Right-handed alpha
Helix 20	AC2	A	953	957	Right-handed 310
Helix 21	AC3	A	958	975	Right-handed alpha
Helix 22	AC4	A	982	995	Right-handed alpha
Helix 23	AC5	A	996	1004	Right-handed alpha
Helix 24	AC6	B	11	15	Right-handed 310
Helix 25	AC7	B	168	172	Right-handed 310
Helix 26	AC8	B	308	313	Right-handed alpha
Helix 27	AC9	C	463	474	Right-handed alpha
Helix 28	AD1	C	477	492	Right-handed alpha
Helix 29	AD2	C	499	511	Right-handed alpha
Helix 30	AD3	C	558	570	Right-handed alpha
Helix 31	AD4	C	570	580	Right-handed alpha
Helix 32	AD5	C	664	683	Right-handed alpha
Helix 33	AD6	C	708	716	Right-handed alpha
Helix 34	AD7	C	735	740	Right-handed alpha
Helix 35	AD8	C	749	763	Right-handed alpha
Helix 36	AD9	C	768	777	Right-handed alpha
Helix 37	AE1	C	792	812	Right-handed alpha
Helix 38	AE2	C	822	840	Right-handed alpha
Helix 39	AE3	C	852	857	Right-handed alpha
Helix 40	AE4	C	859	868	Right-handed alpha
Helix 41	AE5	C	872	890	Right-handed alpha
Helix 42	AE6	C	891	893	Right-handed 310
Helix 43	AE7	C	897	902	Right-handed alpha
Helix 44	AE8	C	902	908	Right-handed alpha
Helix 45	AE9	C	908	923	Right-handed alpha
Helix 46	AF1	C	924	929	Right-handed alpha
Helix 47	AF2	C	933	942	Right-handed alpha
Helix 48	AF3	C	942	951	Right-handed alpha
Helix 49	AF4	C	953	957	Right-handed 310
Helix 50	AF5	C	958	975	Right-handed alpha
Helix 51	AF6	C	982	995	Right-handed alpha
Helix 52	AF7	C	996	1004	Right-handed alpha
Helix 53	AF8	D	11	15	Right-handed 310
Helix 54	AF9	D	168	172	Right-handed 310
Helix 55	AG1	D	308	313	Right-handed alpha

There are 22 sheets in PDB entry 6XNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	554	557	anti-parallel
Strand 3	A	652	658	anti-parallel
Strand 4	A	618	632	anti-parallel
Strand 5	A	637	642	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	603	first strand
Strand 2	A	618	632	anti-parallel
Strand 3	A	590	598	anti-parallel
Strand 4	A	697	702	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	4	8	parallel
Strand 4	B	343	349	anti-parallel
Strand 5	B	326	332	anti-parallel
Strand 6	B	318	321	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	27	30	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	91	94	anti-parallel
Strand 3	B	107	110	anti-parallel
Strand 4	B	124	127	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	192	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	151	156	anti-parallel
Strand 3	B	182	185	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	248	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	251	252	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	289	292	anti-parallel
Strand 4	B	297	300	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	282	283	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	704	anti-parallel
Strand 4	C	591	598	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	652	658	anti-parallel
Strand 7	C	554	557	anti-parallel
Strand 8	C	534	536	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	704	anti-parallel
Strand 4	C	591	598	parallel
Strand 5	C	620	633	anti-parallel
Strand 6	C	636	642	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	50	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	2	8	parallel
Strand 6	D	343	349	anti-parallel
Strand 7	D	327	332	anti-parallel
Strand 8	D	318	321	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	119	127	parallel
Strand 3	D	107	116	anti-parallel
Strand 4	D	91	94	anti-parallel
Strand 5	D	76	78	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	192	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	159	161	anti-parallel
Strand 3	D	175	177	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	182	185	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	252	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	273	first strand
Strand 2	D	288	293	anti-parallel
Strand 3	D	296	299	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	282	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XNY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XNY