Analysis of interatomic Contacts of Structural Units in PDB entry:
6XNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XNZ entry

There are 10 chains in PDB entry 6XNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 459	ALA 1008
B	MET 1	CYS 350
C	GLY 459	ASN 1007
D	MET 1	SER 351
I	G 5	G 35
J	C 3	C 33
x	C 31	G 45
M	C 17	G 31
y	A 24	G 35
L	C 17	T 28

There are 48 helices in PDB entry 6XNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	477	493	Right-handed alpha
Helix 2	AA2	A	499	511	Right-handed alpha
Helix 3	AA3	A	561	581	Right-handed alpha
Helix 4	AA4	A	666	683	Right-handed alpha
Helix 5	AA5	A	708	716	Right-handed alpha
Helix 6	AA6	A	735	739	Right-handed 310
Helix 7	AA7	A	749	763	Right-handed alpha
Helix 8	AA8	A	768	776	Right-handed alpha
Helix 9	AA9	A	792	813	Right-handed alpha
Helix 10	AB1	A	822	840	Right-handed alpha
Helix 11	AB2	A	850	858	Right-handed alpha
Helix 12	AB3	A	859	868	Right-handed alpha
Helix 13	AB4	A	872	895	Right-handed alpha
Helix 14	AB5	A	897	902	Right-handed alpha
Helix 15	AB6	A	902	923	Right-handed alpha
Helix 16	AB7	A	933	942	Right-handed alpha
Helix 17	AB8	A	942	951	Right-handed alpha
Helix 18	AB9	A	958	975	Right-handed alpha
Helix 19	AC1	A	979	995	Right-handed alpha
Helix 20	AC2	A	996	1005	Right-handed alpha
Helix 21	AC3	B	310	314	Right-handed 310
Helix 22	AC4	C	463	473	Right-handed alpha
Helix 23	AC5	C	479	492	Right-handed alpha
Helix 24	AC6	C	499	511	Right-handed alpha
Helix 25	AC7	C	558	580	Right-handed alpha
Helix 26	AC8	C	648	652	Right-handed 310
Helix 27	AC9	C	666	685	Right-handed alpha
Helix 28	AD1	C	708	716	Right-handed alpha
Helix 29	AD2	C	734	740	Right-handed alpha
Helix 30	AD3	C	749	763	Right-handed alpha
Helix 31	AD4	C	768	776	Right-handed alpha
Helix 32	AD5	C	792	813	Right-handed alpha
Helix 33	AD6	C	822	828	Right-handed alpha
Helix 34	AD7	C	830	840	Right-handed alpha
Helix 35	AD8	C	850	856	Right-handed alpha
Helix 36	AD9	C	859	868	Right-handed alpha
Helix 37	AE1	C	872	894	Right-handed alpha
Helix 38	AE2	C	897	902	Right-handed alpha
Helix 39	AE3	C	902	923	Right-handed alpha
Helix 40	AE4	C	933	941	Right-handed alpha
Helix 41	AE5	C	942	951	Right-handed alpha
Helix 42	AE6	C	960	974	Right-handed alpha
Helix 43	AE7	C	982	995	Right-handed alpha
Helix 44	AE8	C	996	1004	Right-handed alpha
Helix 45	AE9	C	1005	1007	Right-handed 310
Helix 46	AF1	D	11	15	Right-handed 310
Helix 47	AF2	D	168	172	Right-handed 310
Helix 48	AF3	D	308	313	Right-handed alpha

There are 23 sheets in PDB entry 6XNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	622	630	anti-parallel
Strand 3	A	653	656	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	694	696	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	345	349	anti-parallel
Strand 3	B	326	330	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	27	28	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	56	59	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	93	97	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	124	127	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	146	first strand
Strand 2	B	151	154	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	194	196	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	219	first strand
Strand 2	B	233	238	anti-parallel
Strand 3	B	247	248	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	289	292	anti-parallel
Strand 4	B	297	300	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	555	556	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	592	first strand
Strand 2	C	698	699	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	594	603	first strand
Strand 2	C	618	628	anti-parallel
Strand 3	C	653	658	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	633	first strand
Strand 2	C	636	637	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	54	59	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	121	122	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	93	95	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	159	161	anti-parallel
Strand 3	D	175	177	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	144	first strand
Strand 2	D	153	155	anti-parallel
Strand 3	D	183	185	anti-parallel
Strand 4	D	192	193	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	217	219	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	288	289	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XNZ