Analysis of interatomic Contacts of Structural Units in PDB entry:
6XOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XOD entry

There are 2 chains in PDB entry 6XOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 154
B
 GLN 118VAL 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6XOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 17Right-handed alpha
Helix 2
AA2
A
91 95Right-handed 310
Helix 3
AA3
A
103 117Right-handed alpha
Helix 4
AA4
A
125 134Right-handed alpha
Helix 5
AA5
A
136 152Right-handed alpha
Helix 6
AA6
B
126 136Right-handed alpha
Helix 7
AA7
B
154 159Right-handed alpha
Helix 8
AA8
B
165 167Right-handed 310
Helix 9
AA9
B
168 179Right-handed alpha
Helix 10
AB1
B
189 203Right-handed alpha
Helix 11
AB2
B
212 214Right-handed 310
Helix 12
AB3
B
221 233Right-handed alpha
Helix 13
AB4
B
241 249Right-handed alpha
Helix 14
AB5
B
275 281Right-handed alpha
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There are 2 sheets in PDB entry 6XOD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
53 59anti-parallel
Strand 4
A
70 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
180 186parallel
Strand 3
B
140 144parallel
Strand 4
B
236 239parallel
Strand 5
B
254 258parallel
Strand 6
B
270 273parallel
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