Analysis of interatomic Contacts of Structural Units in PDB entry:
6XOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XOI entry

There are 3 chains in PDB entry 6XOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9PRO 345
B
 PRO 8VAL 547
C
 TYR 21GLY 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6XOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
19 36Right-handed alpha
Helix 3
AA3
A
45 59Right-handed alpha
Helix 4
AA4
A
92 94Right-handed 310
Helix 5
AA5
A
95 102Right-handed alpha
Helix 6
AA6
A
114 118Right-handed 310
Helix 7
AA7
A
119 126Right-handed 310
Helix 8
AA8
A
135 149Right-handed alpha
Helix 9
AA9
A
215 221Right-handed alpha
Helix 10
AB1
A
226 235Right-handed alpha
Helix 11
AB2
A
238 254Right-handed alpha
Helix 12
AB3
A
258 260Right-handed 310
Helix 13
AB4
A
261 280Right-handed alpha
Helix 14
AB5
A
283 287Right-handed 310
Helix 15
AB6
A
288 294Right-handed 310
Helix 16
AB7
A
299 320Right-handed alpha
Helix 17
AB8
B
9 18Right-handed alpha
Helix 18
AB9
B
26 40Right-handed alpha
Helix 19
AC1
B
53 59Right-handed 310
Helix 20
AC2
B
64 68Right-handed 310
Helix 21
AC3
B
71 84Right-handed alpha
Helix 22
AC4
B
102 108Right-handed alpha
Helix 23
AC5
B
118 133Right-handed alpha
Helix 24
AC6
B
171 177Right-handed alpha
Helix 25
AC7
B
181 198Right-handed alpha
Helix 26
AC8
B
251 260Right-handed alpha
Helix 27
AC9
B
260 268Right-handed alpha
Helix 28
AD1
B
271 275Right-handed 310
Helix 29
AD2
B
283 288Right-handed alpha
Helix 30
AD3
B
307 311Right-handed 310
Helix 31
AD4
B
314 331Right-handed alpha
Helix 32
AD5
B
348 366Right-handed alpha
Helix 33
AD6
B
372 382Right-handed alpha
Helix 34
AD7
B
387 407Right-handed alpha
Helix 35
AD8
B
409 413Right-handed 310
Helix 36
AD9
B
463 468Right-handed alpha
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There are 5 sheets in PDB entry 6XOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
62 66parallel
Strand 3
A
38 42parallel
Strand 4
A
128 131parallel
Strand 5
A
152 159parallel
Strand 6
A
162 168anti-parallel
Strand 7
A
328 332anti-parallel
Strand 8
A
337 341anti-parallel
Strand 9
B
427 432anti-parallel
Strand 10
B
415 418anti-parallel
Strand 11
B
145 151anti-parallel
Strand 12
B
136 142anti-parallel
Strand 13
B
111 114parallel
Strand 14
B
20 23parallel
Strand 15
B
44 48parallel
Strand 16
B
89 93parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
207 212anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 452first strand
Strand 2
B
529 532parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
520 521first strand
Strand 2
B
526 527anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
23 27anti-parallel
Strand 3
C
88 91parallel
Strand 4
C
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il