Analysis of interatomic Contacts of Structural Units in PDB entry:
6XP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XP5 entry

There are 15 chains in PDB entry 6XP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
U	ASP 3	PRO 137
D	GLU 4	GLN 143
F	LEU 13	PHE 207
G	LEU 12	LEU 198
I	ALA 12	LEU 107
N	GLU 91	ARG 815
Q	PHE 25	LYS 622
Z	HIS 23	LYS 122
H	ALA 7	MET 194
K	PRO 18	GLN 158
R	PRO 2	ARG 248
V	GLU 13	ALA 124
a	GLU 118	ARG 732
b	UNK 473	UNK 493
c	UNK 7	UNK 206

There are106 helices in PDB entry 6XP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	U	3	29	Right-handed alpha
Helix 2	AA2	U	56	60	Right-handed 310
Helix 3	AA3	U	62	67	Right-handed alpha
Helix 4	AA4	U	67	77	Right-handed alpha
Helix 5	AA5	U	77	84	Right-handed alpha
Helix 6	AA6	U	92	134	Right-handed alpha
Helix 7	AA7	D	6	26	Right-handed alpha
Helix 8	AA8	D	36	72	Right-handed alpha
Helix 9	AA9	D	76	86	Right-handed alpha
Helix 10	AB1	D	105	117	Right-handed alpha
Helix 11	AB2	D	118	120	Right-handed 310
Helix 12	AB3	F	35	40	Right-handed alpha
Helix 13	AB4	F	48	54	Right-handed alpha
Helix 14	AB5	F	55	57	Right-handed 310
Helix 15	AB6	F	63	68	Right-handed alpha
Helix 16	AB7	F	129	132	Right-handed 310
Helix 17	AB8	F	139	144	Right-handed alpha
Helix 18	AB9	F	144	154	Right-handed alpha
Helix 19	AC1	F	193	199	Right-handed 310
Helix 20	AC2	F	200	206	Right-handed alpha
Helix 21	AC3	G	33	37	Right-handed 310
Helix 22	AC4	G	100	122	Right-handed alpha
Helix 23	AC5	G	123	139	Right-handed alpha
Helix 24	AC6	G	140	157	Right-handed alpha
Helix 25	AC7	G	170	195	Right-handed alpha
Helix 26	AC8	I	41	66	Right-handed alpha
Helix 27	AC9	I	74	104	Right-handed alpha
Helix 28	AD1	N	94	107	Right-handed alpha
Helix 29	AD2	N	116	122	Right-handed alpha
Helix 30	AD3	N	235	257	Right-handed alpha
Helix 31	AD4	N	312	328	Right-handed alpha
Helix 32	AD5	N	331	351	Right-handed alpha
Helix 33	AD6	N	352	359	Right-handed alpha
Helix 34	AD7	N	360	362	Right-handed 310
Helix 35	AD8	N	443	462	Right-handed alpha
Helix 36	AD9	N	537	557	Right-handed alpha
Helix 37	AE1	N	574	578	Right-handed 310
Helix 38	AE2	N	652	669	Right-handed alpha
Helix 39	AE3	N	681	686	Right-handed alpha
Helix 40	AE4	N	687	689	Right-handed 310
Helix 41	AE5	Q	34	45	Right-handed alpha
Helix 42	AE6	Q	53	66	Right-handed alpha
Helix 43	AE7	Q	79	81	Right-handed 310
Helix 44	AE8	Q	82	87	Right-handed alpha
Helix 45	AE9	Q	87	103	Right-handed alpha
Helix 46	AF1	Q	165	183	Right-handed alpha
Helix 47	AF2	Q	185	197	Right-handed alpha
Helix 48	AF3	Q	279	304	Right-handed alpha
Helix 49	AF4	Q	349	353	Right-handed 310
Helix 50	AF5	Q	354	369	Right-handed alpha
Helix 51	AF6	Q	370	372	Right-handed 310
Helix 52	AF7	Q	373	378	Right-handed alpha
Helix 53	AF8	Q	391	415	Right-handed alpha
Helix 54	AF9	Q	512	532	Right-handed alpha
Helix 55	AG1	Q	617	622	Right-handed alpha
Helix 56	AG2	Z	28	37	Right-handed alpha
Helix 57	AG3	Z	42	51	Right-handed alpha
Helix 58	AG4	Z	52	55	Right-handed 310
Helix 59	AG5	Z	56	64	Right-handed alpha
Helix 60	AG6	Z	85	93	Right-handed alpha
Helix 61	AG7	Z	95	102	Right-handed alpha
Helix 62	AG8	Z	102	110	Right-handed alpha
Helix 63	AG9	H	7	9	Right-handed 310
Helix 64	AH1	H	10	38	Right-handed alpha
Helix 65	AH2	H	43	67	Right-handed alpha
Helix 66	AH3	H	68	75	Right-handed alpha
Helix 67	AH4	H	82	87	Right-handed alpha
Helix 68	AH5	H	90	96	Right-handed alpha
Helix 69	AH6	H	101	107	Right-handed alpha
Helix 70	AH7	H	165	181	Right-handed alpha
Helix 71	AH8	H	184	189	Right-handed 310
Helix 72	AH9	K	26	57	Right-handed alpha
Helix 73	AI1	K	100	123	Right-handed alpha
Helix 74	AI2	K	141	148	Right-handed alpha
Helix 75	AI3	K	148	153	Right-handed alpha
Helix 76	AI4	R	19	27	Right-handed alpha
Helix 77	AI5	R	101	106	Right-handed alpha
Helix 78	AI6	R	145	154	Right-handed alpha
Helix 79	AI7	R	219	237	Right-handed alpha
Helix 80	AI8	V	16	29	Right-handed alpha
Helix 81	AI9	V	30	32	Right-handed 310
Helix 82	AJ1	V	33	38	Right-handed alpha
Helix 83	AJ2	V	45	62	Right-handed alpha
Helix 84	AJ3	V	64	73	Right-handed alpha
Helix 85	AJ4	V	90	119	Right-handed alpha
Helix 86	AJ5	a	120	128	Right-handed alpha
Helix 87	AJ6	a	193	197	Right-handed 310
Helix 88	AJ7	a	200	205	Right-handed alpha
Helix 89	AJ8	a	206	208	Right-handed 310
Helix 90	AJ9	a	221	236	Right-handed alpha
Helix 91	AK1	a	252	266	Right-handed alpha
Helix 92	AK2	a	276	281	Right-handed alpha
Helix 93	AK3	a	282	284	Right-handed 310
Helix 94	AK4	a	713	717	Right-handed 310
Helix 95	AK5	a	719	725	Right-handed alpha
Helix 96	AK6	b	474	493	Right-handed alpha
Helix 97	AK7	c	8	24	Right-handed alpha
Helix 98	AK8	c	28	41	Right-handed alpha
Helix 99	AK9	c	54	67	Right-handed alpha
Helix 100	AL1	c	79	100	Right-handed alpha
Helix 101	AL2	c	106	115	Right-handed alpha
Helix 102	AL3	c	116	119	Right-handed 310
Helix 103	AL4	c	130	140	Right-handed alpha
Helix 104	AL5	c	143	156	Right-handed alpha
Helix 105	AL6	c	173	186	Right-handed alpha
Helix 106	AL7	c	192	204	Right-handed alpha

There are 17 sheets in PDB entry 6XP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	84	first strand
Strand 2	F	104	110	anti-parallel
Strand 3	F	122	127	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	274	277	first strand
Strand 2	N	281	285	anti-parallel
Strand 3	N	301	302	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	369	370	first strand
Strand 2	N	380	381	anti-parallel
Strand 3	N	392	393	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	492	493	first strand
Strand 2	N	503	507	anti-parallel
Strand 3	N	512	515	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	584	585	first strand
Strand 2	N	595	598	anti-parallel
Strand 3	N	605	607	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	706	707	first strand
Strand 2	N	754	755	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	199	202	first strand
Strand 2	Q	210	213	anti-parallel
Strand 3	Q	225	226	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	250	252	first strand
Strand 2	Q	329	333	anti-parallel
Strand 3	Q	318	320	anti-parallel
Strand 4	Q	311	313	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	427	428	first strand
Strand 2	Q	458	459	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	461	462	first strand
Strand 2	Q	470	471	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	596	599	first strand
Strand 2	Q	605	608	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	8	9	first strand
Strand 2	R	207	209	anti-parallel
Strand 3	R	176	179	anti-parallel
Strand 4	R	162	167	anti-parallel
Strand 5	R	53	58	anti-parallel
Strand 6	R	94	98	anti-parallel
Strand 7	R	116	120	anti-parallel
Strand 8	R	136	139	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	61	63	first strand
Strand 2	R	155	157	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	161	162	first strand
Strand 2	a	167	171	anti-parallel
Strand 3	a	179	183	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	287	289	first strand
Strand 2	a	296	298	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	381	386	first strand
Strand 2	a	705	707	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	582	585	first strand
Strand 2	a	690	696	anti-parallel
Strand 3	a	658	663	anti-parallel
Strand 4	a	645	647	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XP5