Analysis of interatomic Contacts of Structural Units in PDB entry:
6XPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XPF entry

There are 2 chains in PDB entry 6XPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 52ASP 369
B
 HIS 52ASP 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6XPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 91Right-handed alpha
Helix 2
AA2
A
100 125Right-handed alpha
Helix 3
AA3
A
138 168Right-handed alpha
Helix 4
AA4
A
174 192Right-handed alpha
Helix 5
AA5
A
212 241Right-handed alpha
Helix 6
AA6
A
246 274Right-handed alpha
Helix 7
AA7
A
283 293Right-handed alpha
Helix 8
AA8
A
326 342Right-handed alpha
Helix 9
AA9
A
358 365Right-handed 310
Helix 10
AB1
B
67 69Right-handed 310
Helix 11
AB2
B
70 85Right-handed alpha
Helix 12
AB3
B
102 107Right-handed 310
Helix 13
AB4
B
108 125Right-handed alpha
Helix 14
AB5
B
138 168Right-handed alpha
Helix 15
AB6
B
176 196Right-handed alpha
Helix 16
AB7
B
211 231Right-handed alpha
Helix 17
AB8
B
231 241Right-handed alpha
Helix 18
AB9
B
246 275Right-handed alpha
Helix 19
AC1
B
283 293Right-handed alpha
Helix 20
AC2
B
326 342Right-handed alpha
Helix 21
AC3
B
357 365Right-handed 310
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There are 2 sheets in PDB entry 6XPF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 307first strand
Strand 2
A
313 320anti-parallel
Strand 3
A
346 349parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 307first strand
Strand 2
B
313 320anti-parallel
Strand 3
B
346 349parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il