Analysis of interatomic Contacts of Structural Units in PDB entry:
6XPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XPP entry

There are 4 chains in PDB entry 6XPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 427
B
 SER 2GLY 425
C
 SER 2HIS 428
D
 MET 1PHE 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 6XPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
31 38Right-handed alpha
Helix 4
AA4
A
46 63Right-handed alpha
Helix 5
AA5
A
73 83Right-handed alpha
Helix 6
AA6
A
91 99Right-handed alpha
Helix 7
AA7
A
115 139Right-handed alpha
Helix 8
AA8
A
160 174Right-handed alpha
Helix 9
AA9
A
185 189Right-handed 310
Helix 10
AB1
A
201 219Right-handed alpha
Helix 11
AB2
A
245 247Right-handed 310
Helix 12
AB3
A
264 276Right-handed alpha
Helix 13
AB4
A
277 279Right-handed 310
Helix 14
AB5
A
290 305Right-handed alpha
Helix 15
AB6
A
319 324Right-handed alpha
Helix 16
AB7
A
325 339Right-handed alpha
Helix 17
AB8
A
348 369Right-handed alpha
Helix 18
AB9
A
369 384Right-handed alpha
Helix 19
AC1
A
385 387Right-handed 310
Helix 20
AC2
A
392 397Right-handed alpha
Helix 21
AC3
A
398 410Right-handed alpha
Helix 22
AC4
A
421 427Right-handed alpha
Helix 23
AC5
B
9 20Right-handed alpha
Helix 24
AC6
B
21 24Right-handed 310
Helix 25
AC7
B
31 38Right-handed alpha
Helix 26
AC8
B
46 63Right-handed alpha
Helix 27
AC9
B
73 83Right-handed alpha
Helix 28
AD1
B
91 99Right-handed alpha
Helix 29
AD2
B
115 139Right-handed alpha
Helix 30
AD3
B
160 174Right-handed alpha
Helix 31
AD4
B
185 189Right-handed 310
Helix 32
AD5
B
201 219Right-handed alpha
Helix 33
AD6
B
245 247Right-handed 310
Helix 34
AD7
B
264 276Right-handed alpha
Helix 35
AD8
B
277 279Right-handed 310
Helix 36
AD9
B
290 305Right-handed alpha
Helix 37
AE1
B
319 324Right-handed alpha
Helix 38
AE2
B
325 339Right-handed alpha
Helix 39
AE3
B
348 369Right-handed alpha
Helix 40
AE4
B
369 384Right-handed alpha
Helix 41
AE5
B
385 387Right-handed 310
Helix 42
AE6
B
392 397Right-handed alpha
Helix 43
AE7
B
398 410Right-handed alpha
Helix 44
AE8
C
9 20Right-handed alpha
Helix 45
AE9
C
21 24Right-handed 310
Helix 46
AF1
C
31 38Right-handed alpha
Helix 47
AF2
C
46 63Right-handed alpha
Helix 48
AF3
C
73 83Right-handed alpha
Helix 49
AF4
C
91 99Right-handed alpha
Helix 50
AF5
C
115 139Right-handed alpha
Helix 51
AF6
C
160 174Right-handed alpha
Helix 52
AF7
C
185 189Right-handed 310
Helix 53
AF8
C
201 219Right-handed alpha
Helix 54
AF9
C
245 249Right-handed 310
Helix 55
AG1
C
264 276Right-handed alpha
Helix 56
AG2
C
277 279Right-handed 310
Helix 57
AG3
C
290 305Right-handed alpha
Helix 58
AG4
C
319 324Right-handed alpha
Helix 59
AG5
C
325 339Right-handed alpha
Helix 60
AG6
C
348 369Right-handed alpha
Helix 61
AG7
C
369 384Right-handed alpha
Helix 62
AG8
C
385 387Right-handed 310
Helix 63
AG9
C
392 397Right-handed alpha
Helix 64
AH1
C
398 410Right-handed alpha
Helix 65
AH2
C
421 427Right-handed alpha
Helix 66
AH3
D
9 20Right-handed alpha
Helix 67
AH4
D
21 24Right-handed 310
Helix 68
AH5
D
31 38Right-handed alpha
Helix 69
AH6
D
46 63Right-handed alpha
Helix 70
AH7
D
73 83Right-handed alpha
Helix 71
AH8
D
91 99Right-handed alpha
Helix 72
AH9
D
115 139Right-handed alpha
Helix 73
AI1
D
160 174Right-handed alpha
Helix 74
AI2
D
185 189Right-handed 310
Helix 75
AI3
D
201 219Right-handed alpha
Helix 76
AI4
D
245 247Right-handed 310
Helix 77
AI5
D
264 276Right-handed alpha
Helix 78
AI6
D
277 279Right-handed 310
Helix 79
AI7
D
290 305Right-handed alpha
Helix 80
AI8
D
319 324Right-handed alpha
Helix 81
AI9
D
325 339Right-handed alpha
Helix 82
AJ1
D
348 369Right-handed alpha
Helix 83
AJ2
D
369 384Right-handed alpha
Helix 84
AJ3
D
385 387Right-handed 310
Helix 85
AJ4
D
392 397Right-handed alpha
Helix 86
AJ5
D
398 410Right-handed alpha
Helix 87
AJ6
D
421 427Right-handed alpha
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There are 8 sheets in PDB entry 6XPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
341 346parallel
Strand 3
A
309 313parallel
Strand 4
A
281 284parallel
Strand 5
A
224 229parallel
Strand 6
A
178 182parallel
Strand 7
A
150 153parallel
Strand 8
A
88 90parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
236 237parallel
Strand 3
A
259 261anti-parallel
Strand 4
A
249 253anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
341 346parallel
Strand 3
B
309 313parallel
Strand 4
B
281 284parallel
Strand 5
B
224 229parallel
Strand 6
B
178 182parallel
Strand 7
B
150 153parallel
Strand 8
B
88 90parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
236 237parallel
Strand 3
B
259 261anti-parallel
Strand 4
B
249 253anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 69first strand
Strand 2
C
341 346parallel
Strand 3
C
309 313parallel
Strand 4
C
281 284parallel
Strand 5
C
224 229parallel
Strand 6
C
178 182parallel
Strand 7
C
150 153parallel
Strand 8
C
88 90parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 199first strand
Strand 2
C
236 237parallel
Strand 3
C
259 260anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
66 69first strand
Strand 2
D
341 346parallel
Strand 3
D
309 313parallel
Strand 4
D
281 284parallel
Strand 5
D
224 229parallel
Strand 6
D
178 182parallel
Strand 7
D
150 153parallel
Strand 8
D
88 90parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 199first strand
Strand 2
D
236 237parallel
Strand 3
D
259 261anti-parallel
Strand 4
D
249 253anti-parallel
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