Analysis of interatomic Contacts of Structural Units in PDB entry:
6XRC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XRC entry

There are 2 chains in PDB entry 6XRC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	LEU 596
B	SER 2	ARG 62

There are 65 helices in PDB entry 6XRC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	7	Right-handed alpha
Helix 2	AA2	A	11	33	Right-handed alpha
Helix 3	AA3	A	77	80	Right-handed 310
Helix 4	AA4	A	92	100	Right-handed alpha
Helix 5	AA5	A	110	129	Right-handed alpha
Helix 6	AA6	A	135	143	Right-handed alpha
Helix 7	AA7	A	144	150	Right-handed alpha
Helix 8	AA8	A	169	177	Right-handed alpha
Helix 9	AA9	A	178	181	Right-handed 310
Helix 10	AB1	A	205	215	Right-handed alpha
Helix 11	AB2	A	215	228	Right-handed alpha
Helix 12	AB3	A	232	234	Right-handed 310
Helix 13	AB4	A	242	249	Right-handed alpha
Helix 14	AB5	A	254	260	Right-handed alpha
Helix 15	AB6	A	315	330	Right-handed alpha
Helix 16	AB7	A	330	337	Right-handed alpha
Helix 17	AB8	A	351	358	Right-handed alpha
Helix 18	AB9	A	362	366	Right-handed 310
Helix 19	AC1	A	376	380	Right-handed 310
Helix 20	AC2	A	390	394	Right-handed 310
Helix 21	AC3	A	401	411	Right-handed alpha
Helix 22	AC4	A	413	426	Right-handed alpha
Helix 23	AC5	A	426	437	Right-handed alpha
Helix 24	AC6	A	478	485	Right-handed 310
Helix 25	AC7	A	489	494	Right-handed alpha
Helix 26	AC8	A	494	499	Right-handed alpha
Helix 27	AC9	A	505	516	Right-handed alpha
Helix 28	AD1	A	520	538	Right-handed alpha
Helix 29	AD2	A	539	541	Right-handed 310
Helix 30	AD3	A	542	549	Right-handed alpha
Helix 31	AD4	A	561	568	Right-handed alpha
Helix 32	AD5	B	3	8	Right-handed 310
Helix 33	AD6	B	11	33	Right-handed alpha
Helix 34	AD7	B	77	80	Right-handed 310
Helix 35	AD8	B	92	100	Right-handed alpha
Helix 36	AD9	B	100	105	Right-handed alpha
Helix 37	AE1	B	110	129	Right-handed alpha
Helix 38	AE2	B	135	143	Right-handed alpha
Helix 39	AE3	B	144	152	Right-handed alpha
Helix 40	AE4	B	169	177	Right-handed alpha
Helix 41	AE5	B	178	181	Right-handed 310
Helix 42	AE6	B	205	215	Right-handed alpha
Helix 43	AE7	B	215	229	Right-handed alpha
Helix 44	AE8	B	232	234	Right-handed 310
Helix 45	AE9	B	242	249	Right-handed alpha
Helix 46	AF1	B	249	254	Right-handed alpha
Helix 47	AF2	B	254	260	Right-handed alpha
Helix 48	AF3	B	315	330	Right-handed alpha
Helix 49	AF4	B	330	337	Right-handed alpha
Helix 50	AF5	B	351	358	Right-handed alpha
Helix 51	AF6	B	362	366	Right-handed 310
Helix 52	AF7	B	376	380	Right-handed 310
Helix 53	AF8	B	390	394	Right-handed 310
Helix 54	AF9	B	401	411	Right-handed alpha
Helix 55	AG1	B	413	426	Right-handed alpha
Helix 56	AG2	B	426	437	Right-handed alpha
Helix 57	AG3	B	443	445	Right-handed 310
Helix 58	AG4	B	478	483	Right-handed 310
Helix 59	AG5	B	489	493	Right-handed 310
Helix 60	AG6	B	494	499	Right-handed alpha
Helix 61	AG7	B	505	516	Right-handed alpha
Helix 62	AG8	B	520	538	Right-handed alpha
Helix 63	AG9	B	539	541	Right-handed 310
Helix 64	AH1	B	542	549	Right-handed alpha
Helix 65	AH2	B	560	567	Right-handed alpha

There are 16 sheets in PDB entry 6XRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	59	68	anti-parallel
Strand 4	A	72	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	49	53	anti-parallel
Strand 3	A	59	68	anti-parallel
Strand 4	A	81	84	anti-parallel
Strand 5	A	87	89	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	241	first strand
Strand 2	A	187	192	anti-parallel
Strand 3	A	263	268	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	343	349	anti-parallel
Strand 3	A	369	373	anti-parallel
Strand 4	A	292	295	anti-parallel
Strand 5	A	281	284	anti-parallel
Strand 6	A	273	275	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	301	first strand
Strand 2	A	304	306	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	455	461	parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	384	388	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	439	first strand
Strand 2	A	469	470	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	559	first strand
Strand 2	A	584	589	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	59	68	anti-parallel
Strand 4	B	72	75	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	49	53	anti-parallel
Strand 3	B	59	68	anti-parallel
Strand 4	B	81	84	anti-parallel
Strand 5	B	87	89	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	241	first strand
Strand 2	B	187	192	anti-parallel
Strand 3	B	263	268	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	369	373	anti-parallel
Strand 4	B	292	295	anti-parallel
Strand 5	B	281	284	anti-parallel
Strand 6	B	273	275	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	301	first strand
Strand 2	B	304	306	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	455	461	parallel
Strand 3	B	447	452	anti-parallel
Strand 4	B	384	388	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	485	486	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	559	first strand
Strand 2	B	584	589	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XRC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XRC