Analysis of interatomic Contacts of Structural Units in PDB entry:
6XSO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XSO entry

There are 2 chains in PDB entry 6XSO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7VAL 379
B
 HIS 5HIS 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 6XSO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed 310
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
50 56Right-handed alpha
Helix 4
AA4
A
65 74Right-handed alpha
Helix 5
AA5
A
85 89Right-handed 310
Helix 6
AA6
A
96 112Right-handed alpha
Helix 7
AA7
A
139 162Right-handed alpha
Helix 8
AA8
A
190 194Right-handed 310
Helix 9
AA9
A
195 220Right-handed alpha
Helix 10
AB1
A
221 226Right-handed 310
Helix 11
AB2
A
234 237Right-handed 310
Helix 12
AB3
A
248 253Right-handed alpha
Helix 13
AB4
A
278 297Right-handed alpha
Helix 14
AB5
A
298 301Right-handed 310
Helix 15
AB6
A
319 324Right-handed alpha
Helix 16
AB7
A
324 342Right-handed alpha
Helix 17
AB8
A
354 360Right-handed 310
Helix 18
AB9
A
365 378Right-handed alpha
Helix 19
AC1
B
8 12Right-handed 310
Helix 20
AC2
B
21 29Right-handed alpha
Helix 21
AC3
B
50 56Right-handed alpha
Helix 22
AC4
B
64 74Right-handed alpha
Helix 23
AC5
B
85 89Right-handed 310
Helix 24
AC6
B
96 113Right-handed alpha
Helix 25
AC7
B
139 161Right-handed alpha
Helix 26
AC8
B
190 194Right-handed 310
Helix 27
AC9
B
195 219Right-handed alpha
Helix 28
AD1
B
220 226Right-handed 310
Helix 29
AD2
B
234 237Right-handed 310
Helix 30
AD3
B
248 253Right-handed alpha
Helix 31
AD4
B
278 297Right-handed alpha
Helix 32
AD5
B
298 301Right-handed 310
Helix 33
AD6
B
319 324Right-handed alpha
Helix 34
AD7
B
324 342Right-handed alpha
Helix 35
AD8
B
354 360Right-handed 310
Helix 36
AD9
B
365 378Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6XSO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
78 81parallel
Strand 3
A
116 119parallel
Strand 4
A
168 171parallel
Strand 5
A
229 232parallel
Strand 6
A
264 270parallel
Strand 7
A
304 309parallel
Strand 8
A
345 349parallel
Strand 9
A
31 34parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
78 81parallel
Strand 3
B
116 120parallel
Strand 4
B
168 171parallel
Strand 5
B
229 232parallel
Strand 6
B
264 270parallel
Strand 7
B
304 309parallel
Strand 8
B
345 349parallel
Strand 9
B
31 34parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il