Analysis of interatomic Contacts of Structural Units in PDB entry:
6XT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XT9 entry

There are 5 chains in PDB entry 6XT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 21	SER 587
D	GLU 28	LYS 423
H	MET 5	LEU 505
I	TRP 9	ASN 800
J	VAL 26	GLN 80

There are 70 helices in PDB entry 6XT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	39	Right-handed 310
Helix 2	AA2	A	132	140	Right-handed alpha
Helix 3	AA3	A	148	161	Right-handed alpha
Helix 4	AA4	A	178	185	Right-handed alpha
Helix 5	AA5	A	187	192	Right-handed alpha
Helix 6	AA6	A	431	436	Right-handed alpha
Helix 7	AA7	A	436	444	Right-handed alpha
Helix 8	AA8	A	444	472	Right-handed alpha
Helix 9	AA9	D	35	45	Right-handed alpha
Helix 10	AB1	D	47	62	Right-handed alpha
Helix 11	AB2	D	67	81	Right-handed alpha
Helix 12	AB3	D	84	93	Right-handed alpha
Helix 13	AB4	D	102	111	Right-handed alpha
Helix 14	AB5	D	116	131	Right-handed alpha
Helix 15	AB6	D	136	147	Right-handed alpha
Helix 16	AB7	D	151	165	Right-handed alpha
Helix 17	AB8	D	168	182	Right-handed alpha
Helix 18	AB9	D	184	198	Right-handed alpha
Helix 19	AC1	D	201	216	Right-handed alpha
Helix 20	AC2	D	219	232	Right-handed alpha
Helix 21	AC3	D	235	248	Right-handed alpha
Helix 22	AC4	D	251	263	Right-handed alpha
Helix 23	AC5	D	269	283	Right-handed alpha
Helix 24	AC6	D	285	300	Right-handed alpha
Helix 25	AC7	D	304	317	Right-handed alpha
Helix 26	AC8	D	319	332	Right-handed alpha
Helix 27	AC9	D	338	350	Right-handed alpha
Helix 28	AD1	D	353	367	Right-handed alpha
Helix 29	AD2	D	373	383	Right-handed alpha
Helix 30	AD3	D	390	396	Right-handed alpha
Helix 31	AD4	D	407	422	Right-handed alpha
Helix 32	AD5	H	6	17	Right-handed alpha
Helix 33	AD6	H	20	30	Right-handed alpha
Helix 34	AD7	H	37	50	Right-handed alpha
Helix 35	AD8	H	182	189	Right-handed alpha
Helix 36	AD9	H	189	194	Right-handed alpha
Helix 37	AE1	H	195	210	Right-handed alpha
Helix 38	AE2	H	214	229	Right-handed alpha
Helix 39	AE3	H	230	243	Right-handed alpha
Helix 40	AE4	H	247	261	Right-handed alpha
Helix 41	AE5	H	265	274	Right-handed alpha
Helix 42	AE6	H	275	277	Right-handed 310
Helix 43	AE7	H	281	292	Right-handed alpha
Helix 44	AE8	H	297	302	Right-handed alpha
Helix 45	AE9	H	303	307	Right-handed 310
Helix 46	AF1	H	315	318	Right-handed 310
Helix 47	AF2	H	319	324	Right-handed alpha
Helix 48	AF3	H	333	345	Right-handed alpha
Helix 49	AF4	H	350	363	Right-handed alpha
Helix 50	AF5	H	367	378	Right-handed alpha
Helix 51	AF6	H	384	401	Right-handed alpha
Helix 52	AF7	H	402	417	Right-handed alpha
Helix 53	AF8	H	420	435	Right-handed alpha
Helix 54	AF9	H	436	449	Right-handed alpha
Helix 55	AG1	H	455	462	Right-handed alpha
Helix 56	AG2	H	472	484	Right-handed alpha
Helix 57	AG3	H	488	493	Right-handed alpha
Helix 58	AG4	H	494	504	Right-handed alpha
Helix 59	AG5	I	142	146	Right-handed 310
Helix 60	AG6	I	401	414	Right-handed alpha
Helix 61	AG7	I	558	562	Right-handed 310
Helix 62	AG8	I	609	625	Right-handed alpha
Helix 63	AG9	I	638	660	Right-handed alpha
Helix 64	AH1	I	663	684	Right-handed alpha
Helix 65	AH2	I	696	709	Right-handed alpha
Helix 66	AH3	I	712	742	Right-handed alpha
Helix 67	AH4	I	747	756	Right-handed alpha
Helix 68	AH5	I	767	780	Right-handed alpha
Helix 69	AH6	I	788	799	Right-handed alpha
Helix 70	AH7	J	62	80	Right-handed alpha

There are 25 sheets in PDB entry 6XT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	29	first strand
Strand 2	A	397	401	anti-parallel
Strand 3	A	384	392	anti-parallel
Strand 4	A	373	381	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	75	81	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	92	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	113	115	anti-parallel
Strand 4	A	120	123	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	207	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	227	230	anti-parallel
Strand 4	A	240	243	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	253	first strand
Strand 2	A	263	267	anti-parallel
Strand 3	A	271	275	anti-parallel
Strand 4	A	284	287	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	297	first strand
Strand 2	A	302	306	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	311	first strand
Strand 2	A	324	325	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	337	first strand
Strand 2	A	344	350	anti-parallel
Strand 3	A	355	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	490	first strand
Strand 2	A	498	506	anti-parallel
Strand 3	A	545	547	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	490	first strand
Strand 2	A	498	506	anti-parallel
Strand 3	A	550	553	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	518	520	anti-parallel
Strand 3	A	562	567	anti-parallel
Strand 4	A	579	581	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	28	first strand
Strand 2	I	39	42	anti-parallel
Strand 3	I	49	52	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	82	first strand
Strand 2	I	95	99	anti-parallel
Strand 3	I	102	107	anti-parallel
Strand 4	I	124	125	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	82	first strand
Strand 2	I	95	99	anti-parallel
Strand 3	I	102	107	anti-parallel
Strand 4	I	129	130	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	137	first strand
Strand 2	I	155	156	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	141	first strand
Strand 2	I	151	152	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	160	164	first strand
Strand 2	I	169	174	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	184	186	first strand
Strand 2	I	192	196	anti-parallel
Strand 3	I	202	206	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	245	252	first strand
Strand 2	I	258	264	anti-parallel
Strand 3	I	268	271	anti-parallel
Strand 4	I	277	279	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	290	291	first strand
Strand 2	I	303	306	anti-parallel
Strand 3	I	312	315	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	332	336	first strand
Strand 2	I	344	348	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	430	432	first strand
Strand 2	I	440	444	anti-parallel
Strand 3	I	486	491	anti-parallel
Strand 4	I	465	467	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	472	473	first strand
Strand 2	I	453	460	anti-parallel
Strand 3	I	503	510	anti-parallel
Strand 4	I	519	520	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	472	473	first strand
Strand 2	I	453	460	anti-parallel
Strand 3	I	503	510	anti-parallel
Strand 4	I	523	526	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	546	550	first strand
Strand 2	I	599	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XT9