Analysis of interatomic Contacts of Structural Units in PDB entry:
6XTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XTD entry

There are 2 chains in PDB entry 6XTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1342LEU 1473
B
 MET 0TYR 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6XTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1345 1353Right-handed alpha
Helix 2
AA2
A
1389 1396Right-handed alpha
Helix 3
AA3
A
1399 1407Right-handed alpha
Helix 4
AA4
A
1441 1446Right-handed alpha
Helix 5
AA5
A
1457 1461Right-handed alpha
Helix 6
AA6
B
22 27Right-handed alpha
Helix 7
AA7
B
85 89Right-handed alpha
Helix 8
AA8
B
97 112Right-handed alpha
Helix 9
AA9
B
143 145Right-handed 310
Helix 10
AB1
B
147 158Right-handed alpha
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There are 4 sheets in PDB entry 6XTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1366 1370first strand
Strand 2
A
1430 1436anti-parallel
Strand 3
A
1451 1454anti-parallel
Strand 4
A
1386 1388anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1375 1380first strand
Strand 2
A
1420 1426anti-parallel
Strand 3
A
1462 1470anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
10 12anti-parallel
Strand 3
B
15 17anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
77 84anti-parallel
Strand 5
B
134 141anti-parallel
Strand 6
B
122 129anti-parallel
Strand 7
B
117 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il