Analysis of interatomic Contacts of Structural Units in PDB entry:
6XTF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XTF entry

There are 3 chains in PDB entry 6XTF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	HIS 317
B	GLN 3	HIS 317
C	ALA 2	PHE 38

There are 30 helices in PDB entry 6XTF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	27	Right-handed alpha
Helix 2	AA2	A	41	46	Right-handed alpha
Helix 3	AA3	A	60	75	Right-handed alpha
Helix 4	AA4	A	135	140	Right-handed alpha
Helix 5	AA5	A	141	144	Right-handed 310
Helix 6	AA6	A	154	165	Right-handed alpha
Helix 7	AA7	A	178	183	Right-handed 310
Helix 8	AA8	A	186	192	Right-handed alpha
Helix 9	AA9	A	245	249	Right-handed 310
Helix 10	AB1	A	277	281	Right-handed 310
Helix 11	AB2	A	286	306	Right-handed alpha
Helix 12	AB3	B	14	27	Right-handed alpha
Helix 13	AB4	B	41	46	Right-handed alpha
Helix 14	AB5	B	60	75	Right-handed alpha
Helix 15	AB6	B	135	140	Right-handed alpha
Helix 16	AB7	B	141	144	Right-handed 310
Helix 17	AB8	B	154	165	Right-handed alpha
Helix 18	AB9	B	178	183	Right-handed 310
Helix 19	AC1	B	186	192	Right-handed alpha
Helix 20	AC2	B	245	249	Right-handed 310
Helix 21	AC3	B	277	281	Right-handed 310
Helix 22	AC4	B	286	306	Right-handed alpha
Helix 23	AC5	C	24	32	Right-handed alpha
Helix 24	AC6	C	66	72	Right-handed alpha
Helix 25	AC7	C	78	80	Right-handed 310
Helix 26	AC8	C	92	97	Right-handed 310
Helix 27	AC9	D	24	32	Right-handed alpha
Helix 28	AD1	D	66	72	Right-handed alpha
Helix 29	AD2	D	78	80	Right-handed 310
Helix 30	AD3	D	92	97	Right-handed 310

There are 12 sheets in PDB entry 6XTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	31	35	parallel
Strand 3	A	5	11	parallel
Strand 4	A	101	110	parallel
Strand 5	A	94	98	anti-parallel
Strand 6	A	86	88	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	31	35	parallel
Strand 3	A	5	11	parallel
Strand 4	A	101	110	parallel
Strand 5	A	273	275	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	233	236	parallel
Strand 3	A	147	151	parallel
Strand 4	A	170	174	parallel
Strand 5	A	195	198	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	208	first strand
Strand 2	A	213	219	anti-parallel
Strand 3	A	227	230	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	31	35	parallel
Strand 3	B	5	11	parallel
Strand 4	B	101	110	parallel
Strand 5	B	94	98	anti-parallel
Strand 6	B	86	88	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	31	35	parallel
Strand 3	B	5	11	parallel
Strand 4	B	101	110	parallel
Strand 5	B	273	275	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	233	236	parallel
Strand 3	B	147	151	parallel
Strand 4	B	170	175	parallel
Strand 5	B	195	199	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	208	first strand
Strand 2	B	213	219	anti-parallel
Strand 3	B	226	230	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	20	first strand
Strand 2	C	3	10	anti-parallel
Strand 3	C	86	89	parallel
Strand 4	C	49	54	anti-parallel
Strand 5	C	74	76	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	81	82	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	20	first strand
Strand 2	D	3	10	anti-parallel
Strand 3	D	86	89	parallel
Strand 4	D	49	54	anti-parallel
Strand 5	D	74	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	81	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XTF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XTF