Analysis of interatomic Contacts of Structural Units in PDB entry:
6XUG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XUG entry

There are 2 chains in PDB entry 6XUG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 27	SER 549
B	TRP 27	SER 549

There are 40 helices in PDB entry 6XUG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	57	Right-handed 310
Helix 2	AA2	A	60	75	Right-handed alpha
Helix 3	AA3	A	90	97	Right-handed alpha
Helix 4	AA4	A	98	108	Right-handed alpha
Helix 5	AA5	A	116	121	Right-handed 310
Helix 6	AA6	A	124	129	Right-handed alpha
Helix 7	AA7	A	149	155	Right-handed alpha
Helix 8	AA8	A	180	185	Right-handed alpha
Helix 9	AA9	A	195	210	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	317	333	Right-handed alpha
Helix 12	AB3	A	349	354	Right-handed alpha
Helix 13	AB4	A	358	374	Right-handed alpha
Helix 14	AB5	A	392	394	Right-handed 310
Helix 15	AB6	A	407	415	Right-handed alpha
Helix 16	AB7	A	428	438	Right-handed alpha
Helix 17	AB8	A	499	503	Right-handed alpha
Helix 18	AB9	A	504	507	Right-handed 310
Helix 19	AC1	A	508	515	Right-handed alpha
Helix 20	AC2	A	524	536	Right-handed alpha
Helix 21	AC3	B	53	57	Right-handed 310
Helix 22	AC4	B	60	75	Right-handed alpha
Helix 23	AC5	B	90	97	Right-handed alpha
Helix 24	AC6	B	98	108	Right-handed alpha
Helix 25	AC7	B	116	121	Right-handed 310
Helix 26	AC8	B	124	129	Right-handed alpha
Helix 27	AC9	B	149	155	Right-handed alpha
Helix 28	AD1	B	180	184	Right-handed 310
Helix 29	AD2	B	195	210	Right-handed alpha
Helix 30	AD3	B	222	233	Right-handed alpha
Helix 31	AD4	B	317	332	Right-handed alpha
Helix 32	AD5	B	349	354	Right-handed alpha
Helix 33	AD6	B	358	374	Right-handed alpha
Helix 34	AD7	B	392	394	Right-handed 310
Helix 35	AD8	B	407	415	Right-handed alpha
Helix 36	AD9	B	428	438	Right-handed alpha
Helix 37	AE1	B	499	503	Right-handed alpha
Helix 38	AE2	B	504	507	Right-handed 310
Helix 39	AE3	B	508	515	Right-handed alpha
Helix 40	AE4	B	524	536	Right-handed alpha

There are 14 sheets in PDB entry 6XUG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	112	114	parallel
Strand 3	A	78	82	parallel
Strand 4	A	28	34	parallel
Strand 5	A	286	294	anti-parallel
Strand 6	A	300	305	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	112	114	parallel
Strand 3	A	78	82	parallel
Strand 4	A	28	34	parallel
Strand 5	A	286	294	anti-parallel
Strand 6	A	308	309	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	191	193	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	169	177	anti-parallel
Strand 3	A	215	220	parallel
Strand 4	A	238	240	parallel
Strand 5	A	274	278	parallel
Strand 6	A	265	268	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	340	342	anti-parallel
Strand 3	A	537	538	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	386	390	anti-parallel
Strand 3	A	492	498	parallel
Strand 4	A	420	427	anti-parallel
Strand 5	A	517	523	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	469	475	anti-parallel
Strand 3	A	455	459	anti-parallel
Strand 4	A	546	548	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	112	114	parallel
Strand 3	B	78	82	parallel
Strand 4	B	28	34	parallel
Strand 5	B	286	294	anti-parallel
Strand 6	B	300	305	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	112	114	parallel
Strand 3	B	78	82	parallel
Strand 4	B	28	34	parallel
Strand 5	B	286	294	anti-parallel
Strand 6	B	308	309	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	191	193	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	169	177	anti-parallel
Strand 3	B	215	220	parallel
Strand 4	B	238	240	parallel
Strand 5	B	274	278	parallel
Strand 6	B	265	268	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	340	342	anti-parallel
Strand 3	B	537	538	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	453	first strand
Strand 2	B	386	390	anti-parallel
Strand 3	B	492	498	parallel
Strand 4	B	420	427	anti-parallel
Strand 5	B	517	523	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	469	475	anti-parallel
Strand 3	B	455	459	anti-parallel
Strand 4	B	546	548	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XUG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XUG