Analysis of interatomic Contacts of Structural Units in PDB entry:
6XUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XUQ entry

There is 1 chain in PDB entry 6XUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 27SER 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6XUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
59 75Right-handed alpha
Helix 3
AA3
A
90 97Right-handed alpha
Helix 4
AA4
A
98 108Right-handed alpha
Helix 5
AA5
A
116 121Right-handed 310
Helix 6
AA6
A
124 129Right-handed alpha
Helix 7
AA7
A
149 155Right-handed alpha
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
195 210Right-handed alpha
Helix 10
AB1
A
222 233Right-handed alpha
Helix 11
AB2
A
317 332Right-handed alpha
Helix 12
AB3
A
333 335Right-handed 310
Helix 13
AB4
A
349 354Right-handed alpha
Helix 14
AB5
A
358 372Right-handed alpha
Helix 15
AB6
A
392 394Right-handed 310
Helix 16
AB7
A
407 415Right-handed alpha
Helix 17
AB8
A
428 439Right-handed alpha
Helix 18
AB9
A
499 503Right-handed alpha
Helix 19
AC1
A
504 507Right-handed 310
Helix 20
AC2
A
508 515Right-handed alpha
Helix 21
AC3
A
523 536Right-handed alpha
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There are 7 sheets in PDB entry 6XUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
112 114parallel
Strand 3
A
78 82parallel
Strand 4
A
28 34parallel
Strand 5
A
286 294anti-parallel
Strand 6
A
300 305anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
112 114parallel
Strand 3
A
78 82parallel
Strand 4
A
28 34parallel
Strand 5
A
286 294anti-parallel
Strand 6
A
308 309anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
191 193anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
169 177anti-parallel
Strand 3
A
215 220parallel
Strand 4
A
238 240parallel
Strand 5
A
274 278parallel
Strand 6
A
265 268anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
537 538parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
386 390anti-parallel
Strand 3
A
492 498parallel
Strand 4
A
421 427anti-parallel
Strand 5
A
518 519anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
455 459anti-parallel
Strand 4
A
546 548parallel
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