Analysis of interatomic Contacts of Structural Units in PDB entry:
6XV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XV8 entry

There are 4 chains in PDB entry 6XV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	THR 508
B	LEU 4	SER 510
C	VAL 2	THR 508
D	VAL 2	THR 508

There are 53 helices in PDB entry 6XV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	44	Right-handed alpha
Helix 2	AA2	A	65	71	Right-handed alpha
Helix 3	AA3	A	74	106	Right-handed alpha
Helix 4	AA4	A	126	158	Right-handed alpha
Helix 5	AA5	A	193	211	Right-handed alpha
Helix 6	AA6	A	211	218	Right-handed alpha
Helix 7	AA7	A	256	273	Right-handed alpha
Helix 8	AA8	A	277	298	Right-handed alpha
Helix 9	AA9	A	299	301	Right-handed 310
Helix 10	AB1	A	359	379	Right-handed alpha
Helix 11	AB2	A	447	450	Right-handed 310
Helix 12	AB3	A	494	498	Right-handed 310
Helix 13	AB4	B	25	44	Right-handed alpha
Helix 14	AB5	B	66	71	Right-handed alpha
Helix 15	AB6	B	74	106	Right-handed alpha
Helix 16	AB7	B	123	126	Right-handed 310
Helix 17	AB8	B	127	158	Right-handed alpha
Helix 18	AB9	B	161	167	Right-handed alpha
Helix 19	AC1	B	193	210	Right-handed alpha
Helix 20	AC2	B	211	221	Right-handed alpha
Helix 21	AC3	B	254	273	Right-handed alpha
Helix 22	AC4	B	279	298	Right-handed alpha
Helix 23	AC5	B	359	380	Right-handed alpha
Helix 24	AC6	B	413	416	Right-handed 310
Helix 25	AC7	B	447	450	Right-handed 310
Helix 26	AC8	B	472	476	Right-handed 310
Helix 27	AC9	B	494	498	Right-handed 310
Helix 28	AD1	C	25	44	Right-handed alpha
Helix 29	AD2	C	64	71	Right-handed alpha
Helix 30	AD3	C	74	106	Right-handed alpha
Helix 31	AD4	C	123	126	Right-handed 310
Helix 32	AD5	C	127	157	Right-handed alpha
Helix 33	AD6	C	193	210	Right-handed alpha
Helix 34	AD7	C	213	218	Right-handed alpha
Helix 35	AD8	C	255	273	Right-handed alpha
Helix 36	AD9	C	279	298	Right-handed alpha
Helix 37	AE1	C	299	301	Right-handed 310
Helix 38	AE2	C	359	379	Right-handed alpha
Helix 39	AE3	C	447	450	Right-handed 310
Helix 40	AE4	C	472	476	Right-handed 310
Helix 41	AE5	C	494	498	Right-handed 310
Helix 42	AE6	D	25	44	Right-handed alpha
Helix 43	AE7	D	65	71	Right-handed alpha
Helix 44	AE8	D	74	105	Right-handed alpha
Helix 45	AE9	D	130	158	Right-handed alpha
Helix 46	AF1	D	193	207	Right-handed alpha
Helix 47	AF2	D	210	216	Right-handed alpha
Helix 48	AF3	D	254	272	Right-handed alpha
Helix 49	AF4	D	277	298	Right-handed alpha
Helix 50	AF5	D	299	301	Right-handed 310
Helix 51	AF6	D	359	379	Right-handed alpha
Helix 52	AF7	D	472	476	Right-handed 310
Helix 53	AF8	D	494	498	Right-handed 310

There are 14 sheets in PDB entry 6XV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	391	408	anti-parallel
Strand 3	A	316	318	anti-parallel
Strand 4	A	331	332	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	23	first strand
Strand 2	A	391	408	anti-parallel
Strand 3	A	463	469	anti-parallel
Strand 4	A	453	457	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	445	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	418	424	anti-parallel
Strand 4	A	478	484	anti-parallel
Strand 5	A	500	501	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	445	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	418	424	anti-parallel
Strand 4	A	478	484	anti-parallel
Strand 5	A	505	506	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	331	first strand
Strand 2	B	317	321	anti-parallel
Strand 3	B	391	408	anti-parallel
Strand 4	B	12	23	anti-parallel
Strand 5	C	5	22	anti-parallel
Strand 6	C	392	408	anti-parallel
Strand 7	C	317	319	anti-parallel
Strand 8	C	329	331	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	458	first strand
Strand 2	B	463	469	anti-parallel
Strand 3	B	391	408	anti-parallel
Strand 4	B	12	23	anti-parallel
Strand 5	C	5	22	anti-parallel
Strand 6	C	392	408	anti-parallel
Strand 7	C	463	468	anti-parallel
Strand 8	C	453	458	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	445	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	477	484	anti-parallel
Strand 5	B	500	501	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	445	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	477	484	anti-parallel
Strand 5	B	505	507	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	445	first strand
Strand 2	C	431	435	anti-parallel
Strand 3	C	418	424	anti-parallel
Strand 4	C	477	484	anti-parallel
Strand 5	C	500	501	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	445	first strand
Strand 2	C	431	435	anti-parallel
Strand 3	C	418	424	anti-parallel
Strand 4	C	477	484	anti-parallel
Strand 5	C	505	507	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	391	408	anti-parallel
Strand 3	D	317	318	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	23	first strand
Strand 2	D	391	408	anti-parallel
Strand 3	D	463	469	anti-parallel
Strand 4	D	454	458	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	445	first strand
Strand 2	D	431	437	anti-parallel
Strand 3	D	419	424	anti-parallel
Strand 4	D	477	483	anti-parallel
Strand 5	D	500	501	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	445	first strand
Strand 2	D	431	437	anti-parallel
Strand 3	D	419	424	anti-parallel
Strand 4	D	477	483	anti-parallel
Strand 5	D	505	507	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XV8