Analysis of interatomic Contacts of Structural Units in PDB entry:
6XVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XVI entry

There are 4 chains in PDB entry 6XVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	SER 511
B	VAL 2	SER 510
C	VAL 2	SER 510
D	VAL 2	GLN 32

There are 50 helices in PDB entry 6XVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	44	Right-handed alpha
Helix 2	AA2	A	64	71	Right-handed alpha
Helix 3	AA3	A	74	105	Right-handed alpha
Helix 4	AA4	A	120	158	Right-handed alpha
Helix 5	AA5	A	159	164	Right-handed 310
Helix 6	AA6	A	193	211	Right-handed alpha
Helix 7	AA7	A	211	228	Right-handed alpha
Helix 8	AA8	A	252	273	Right-handed alpha
Helix 9	AA9	A	277	298	Right-handed alpha
Helix 10	AB1	A	299	301	Right-handed 310
Helix 11	AB2	A	359	380	Right-handed alpha
Helix 12	AB3	A	472	476	Right-handed 310
Helix 13	AB4	A	494	498	Right-handed 310
Helix 14	AB5	B	25	44	Right-handed alpha
Helix 15	AB6	B	64	71	Right-handed alpha
Helix 16	AB7	B	74	106	Right-handed alpha
Helix 17	AB8	B	123	158	Right-handed alpha
Helix 18	AB9	B	193	211	Right-handed alpha
Helix 19	AC1	B	211	226	Right-handed alpha
Helix 20	AC2	B	254	273	Right-handed alpha
Helix 21	AC3	B	277	298	Right-handed alpha
Helix 22	AC4	B	299	301	Right-handed 310
Helix 23	AC5	B	360	380	Right-handed alpha
Helix 24	AC6	B	472	476	Right-handed 310
Helix 25	AC7	B	494	498	Right-handed 310
Helix 26	AC8	C	25	44	Right-handed alpha
Helix 27	AC9	C	64	71	Right-handed alpha
Helix 28	AD1	C	74	106	Right-handed alpha
Helix 29	AD2	C	124	157	Right-handed alpha
Helix 30	AD3	C	193	211	Right-handed alpha
Helix 31	AD4	C	212	226	Right-handed alpha
Helix 32	AD5	C	253	273	Right-handed alpha
Helix 33	AD6	C	277	298	Right-handed alpha
Helix 34	AD7	C	299	301	Right-handed 310
Helix 35	AD8	C	360	380	Right-handed alpha
Helix 36	AD9	C	472	476	Right-handed 310
Helix 37	AE1	C	494	498	Right-handed 310
Helix 38	AE2	D	25	44	Right-handed alpha
Helix 39	AE3	D	64	71	Right-handed alpha
Helix 40	AE4	D	74	105	Right-handed alpha
Helix 41	AE5	D	122	158	Right-handed alpha
Helix 42	AE6	D	159	164	Right-handed 310
Helix 43	AE7	D	193	211	Right-handed alpha
Helix 44	AE8	D	211	224	Right-handed alpha
Helix 45	AE9	D	255	273	Right-handed alpha
Helix 46	AF1	D	277	298	Right-handed alpha
Helix 47	AF2	D	299	301	Right-handed 310
Helix 48	AF3	D	360	380	Right-handed alpha
Helix 49	AF4	D	472	476	Right-handed 310
Helix 50	AF5	D	494	498	Right-handed 310

There are 16 sheets in PDB entry 6XVI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	402	409	anti-parallel
Strand 3	A	463	469	anti-parallel
Strand 4	A	453	458	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	23	first strand
Strand 2	A	391	402	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	320	first strand
Strand 2	A	328	332	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	477	484	anti-parallel
Strand 3	A	418	424	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	443	445	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	402	409	anti-parallel
Strand 3	B	463	469	anti-parallel
Strand 4	B	453	458	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	23	first strand
Strand 2	B	391	402	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	328	332	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	507	first strand
Strand 2	B	477	484	anti-parallel
Strand 3	B	418	424	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	443	445	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	402	409	anti-parallel
Strand 3	C	463	469	anti-parallel
Strand 4	C	453	458	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	23	first strand
Strand 2	C	391	402	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	321	first strand
Strand 2	C	327	332	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	507	first strand
Strand 2	C	477	484	anti-parallel
Strand 3	C	418	424	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	443	445	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	402	409	anti-parallel
Strand 3	D	463	469	anti-parallel
Strand 4	D	453	458	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	23	first strand
Strand 2	D	391	402	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	321	first strand
Strand 2	D	327	332	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	507	first strand
Strand 2	D	477	484	anti-parallel
Strand 3	D	418	424	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	443	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XVI