Analysis of interatomic Contacts of Structural Units in PDB entry:
6XX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XX8 entry

There are 2 chains in PDB entry 6XX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 335
B
 SER 2GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6XX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 84Right-handed alpha
Helix 2
AA2
A
115 120Right-handed alpha
Helix 3
AA3
A
121 123Right-handed 310
Helix 4
AA4
A
124 145Right-handed alpha
Helix 5
AA5
A
153 155Right-handed 310
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
194 199Right-handed alpha
Helix 8
AA8
A
206 222Right-handed alpha
Helix 9
AA9
A
232 245Right-handed alpha
Helix 10
AB1
A
245 256Right-handed alpha
Helix 11
AB2
A
261 269Right-handed alpha
Helix 12
AB3
A
275 280Right-handed 310
Helix 13
AB4
A
284 288Right-handed 310
Helix 14
AB5
A
289 300Right-handed alpha
Helix 15
AB6
A
309 315Right-handed alpha
Helix 16
AB7
A
316 318Right-handed 310
Helix 17
AB8
A
319 334Right-handed alpha
Helix 18
AB9
B
9 14Right-handed alpha
Helix 19
AC1
B
15 20Right-handed alpha
Helix 20
AC2
B
30 32Right-handed 310
Helix 21
AC3
B
69 84Right-handed alpha
Helix 22
AC4
B
115 120Right-handed alpha
Helix 23
AC5
B
121 123Right-handed 310
Helix 24
AC6
B
124 145Right-handed alpha
Helix 25
AC7
B
153 155Right-handed 310
Helix 26
AC8
B
189 193Right-handed 310
Helix 27
AC9
B
194 199Right-handed alpha
Helix 28
AD1
B
206 222Right-handed alpha
Helix 29
AD2
B
232 245Right-handed alpha
Helix 30
AD3
B
245 256Right-handed alpha
Helix 31
AD4
B
261 269Right-handed alpha
Helix 32
AD5
B
275 280Right-handed 310
Helix 33
AD6
B
284 288Right-handed 310
Helix 34
AD7
B
289 300Right-handed alpha
Helix 35
AD8
B
303 307Right-handed 310
Helix 36
AD9
B
309 315Right-handed alpha
Helix 37
AE1
B
316 318Right-handed 310
Helix 38
AE2
B
319 333Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6XX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
92 97parallel
Strand 3
A
104 109anti-parallel
Strand 4
A
59 65anti-parallel
Strand 5
A
46 53anti-parallel
Strand 6
A
34 42anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 42first strand
Strand 2
B
46 53anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
104 109anti-parallel
Strand 5
B
92 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
165 168anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il