Analysis of interatomic Contacts of Structural Units in PDB entry:
6XX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XX9 entry

There is 1 chain in PDB entry 6XX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0SER 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6XX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
30 32Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
A
121 123Right-handed 310
Helix 7
AA7
A
124 145Right-handed alpha
Helix 8
AA8
A
153 155Right-handed 310
Helix 9
AA9
A
189 193Right-handed 310
Helix 10
AB1
A
194 199Right-handed alpha
Helix 11
AB2
A
206 222Right-handed alpha
Helix 12
AB3
A
232 245Right-handed alpha
Helix 13
AB4
A
245 256Right-handed alpha
Helix 14
AB5
A
261 269Right-handed alpha
Helix 15
AB6
A
275 280Right-handed 310
Helix 16
AB7
A
284 288Right-handed 310
Helix 17
AB8
A
289 300Right-handed alpha
Helix 18
AB9
A
303 307Right-handed 310
Helix 19
AC1
A
309 315Right-handed alpha
Helix 20
AC2
A
316 318Right-handed 310
Helix 21
AC3
A
319 328Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6XX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 42first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
92 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
165 168anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il