Analysis of interatomic Contacts of Structural Units in PDB entry:
6XXS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XXS entry

There are 8 chains in PDB entry 6XXS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ALA 127
B
 PRO -4LYS 126
C
 GLY 1340ARG 1356
D
 ILE 1341ARG 1356
E
 ASP 6ALA 127
G
 GLY 1340ARG 1356
F
 SER -2LYS 126
H
 ILE 1341ARG 1356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6XXS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
79 93Right-handed alpha
Helix 5
AA5
A
101 112Right-handed alpha
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
B
13 28Right-handed alpha
Helix 8
AA8
B
46 54Right-handed alpha
Helix 9
AA9
B
54 61Right-handed alpha
Helix 10
AB1
B
79 93Right-handed alpha
Helix 11
AB2
B
101 112Right-handed alpha
Helix 12
AB3
B
114 126Right-handed alpha
Helix 13
AB4
E
13 28Right-handed alpha
Helix 14
AB5
E
46 54Right-handed alpha
Helix 15
AB6
E
54 63Right-handed alpha
Helix 16
AB7
E
64 68Right-handed 310
Helix 17
AB8
E
79 93Right-handed alpha
Helix 18
AB9
E
101 112Right-handed alpha
Helix 19
AC1
E
114 125Right-handed alpha
Helix 20
AC2
F
13 28Right-handed alpha
Helix 21
AC3
F
46 54Right-handed alpha
Helix 22
AC4
F
54 63Right-handed alpha
Helix 23
AC5
F
63 68Right-handed alpha
Helix 24
AC6
F
79 93Right-handed alpha
Helix 25
AC7
F
101 112Right-handed alpha
Helix 26
AC8
F
114 124Right-handed alpha
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There are 8 sheets in PDB entry 6XXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
A
7 11anti-parallel
Strand 3
D
1342 1346parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
34 38anti-parallel
Strand 3
A
71 73parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
B
7 11anti-parallel
Strand 3
C
1342 1346parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
34 38anti-parallel
Strand 3
B
71 73parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
94 95first strand
Strand 2
E
8 11anti-parallel
Strand 3
H
1343 1346parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 45first strand
Strand 2
E
34 38anti-parallel
Strand 3
E
71 73parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 97first strand
Strand 2
F
7 11anti-parallel
Strand 3
G
1342 1346parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 45first strand
Strand 2
F
34 38anti-parallel
Strand 3
F
71 73parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il