Analysis of interatomic Contacts of Structural Units in PDB entry:
6XXV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XXV entry

There are 6 chains in PDB entry 6XXV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14LYS 239
B
 ASP 11GLU 223
C
 MET 6LEU 116
D
 ARG 12GLY 243
E
 ASP 11GLY 225
F
 GLU 4THR 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6XXV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 77Right-handed 310
Helix 2
AA2
A
99 103Right-handed 310
Helix 3
AA3
A
181 183Right-handed 310
Helix 4
AA4
A
226 229Right-handed 310
Helix 5
AA5
B
89 93Right-handed 310
Helix 6
AA6
B
131 136Right-handed alpha
Helix 7
AA7
B
193 198Right-handed alpha
Helix 8
AA8
C
7 31Right-handed alpha
Helix 9
AA9
C
39 73Right-handed alpha
Helix 10
AB1
C
77 106Right-handed alpha
Helix 11
AB2
D
86 88Right-handed 310
Helix 12
AB3
D
99 103Right-handed 310
Helix 13
AB4
D
181 183Right-handed 310
Helix 14
AB5
D
212 214Right-handed 310
Helix 15
AB6
D
226 229Right-handed 310
Helix 16
AB7
E
89 93Right-handed 310
Helix 17
AB8
E
131 137Right-handed alpha
Helix 18
AB9
E
193 198Right-handed alpha
Helix 19
AC1
F
5 30Right-handed alpha
Helix 20
AC2
F
44 73Right-handed alpha
Helix 21
AC3
F
77 107Right-handed alpha
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There are 24 sheets in PDB entry 6XXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
80 81anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
90 95anti-parallel
Strand 4
A
84 85anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
132 136parallel
Strand 3
A
104 115anti-parallel
Strand 4
A
46 51anti-parallel
Strand 5
A
58 63anti-parallel
Strand 6
A
70 72anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
132 136parallel
Strand 3
A
104 115anti-parallel
Strand 4
A
120 128anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
161 170anti-parallel
Strand 3
A
201 209anti-parallel
Strand 4
A
188 190anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 149first strand
Strand 2
A
161 170anti-parallel
Strand 3
A
201 209anti-parallel
Strand 4
A
194 195anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
230 235anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
72 76anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
112 117parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
43 48anti-parallel
Strand 5
B
55 59anti-parallel
Strand 6
B
63 64anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
112 117parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
107 108anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
183 192anti-parallel
Strand 4
B
169 173anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
201 207anti-parallel
Strand 4
B
215 220anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
114 115parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
30 37anti-parallel
Strand 3
D
90 95anti-parallel
Strand 4
D
80 85anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
132 136parallel
Strand 3
D
104 115anti-parallel
Strand 4
D
46 51anti-parallel
Strand 5
D
58 63anti-parallel
Strand 6
D
70 72anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
132 136parallel
Strand 3
D
104 115anti-parallel
Strand 4
D
120 128anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 149first strand
Strand 2
D
160 170anti-parallel
Strand 3
D
201 210anti-parallel
Strand 4
D
188 190anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
145 149first strand
Strand 2
D
160 170anti-parallel
Strand 3
D
201 210anti-parallel
Strand 4
D
194 195anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 179first strand
Strand 2
D
220 225anti-parallel
Strand 3
D
230 235anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 17first strand
Strand 2
E
29 35anti-parallel
Strand 3
E
80 85anti-parallel
Strand 4
E
72 77anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 24first strand
Strand 2
E
112 117parallel
Strand 3
E
94 100anti-parallel
Strand 4
E
43 48anti-parallel
Strand 5
E
55 59anti-parallel
Strand 6
E
63 64anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 24first strand
Strand 2
E
112 117parallel
Strand 3
E
94 100anti-parallel
Strand 4
E
107 108anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
124 128first strand
Strand 2
E
139 149anti-parallel
Strand 3
E
183 192anti-parallel
Strand 4
E
169 173anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
163 165first strand
Strand 2
E
155 160anti-parallel
Strand 3
E
201 207anti-parallel
Strand 4
E
215 220anti-parallel
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