Analysis of interatomic Contacts of Structural Units in PDB entry:
6XXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XXW entry

There is 1 chain in PDB entry 6XXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6XXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed alpha
Helix 2
AA2
A
63 67Right-handed 310
Helix 3
AA3
A
106 109Right-handed 310
Helix 4
AA4
A
298 313Right-handed alpha
Helix 5
AA5
A
325 336Right-handed alpha
Helix 6
AA6
A
364 383Right-handed alpha
Helix 7
AA7
A
401 419Right-handed alpha
Helix 8
AA8
A
437 441Right-handed 310
Helix 9
AA9
A
458 460Right-handed 310
Helix 10
AB1
A
461 478Right-handed alpha
Helix 11
AB2
A
503 519Right-handed alpha
Helix 12
AB3
A
559 572Right-handed alpha
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There are 9 sheets in PDB entry 6XXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
161 171anti-parallel
Strand 3
A
36 37anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
161 171anti-parallel
Strand 3
A
70 79anti-parallel
Strand 4
A
101 104anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
114 122anti-parallel
Strand 5
A
81 86anti-parallel
Strand 6
A
89 95anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
148 152anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 186first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
222 228anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 219first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
241 248anti-parallel
Strand 4
A
253 260anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 238anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
271 274anti-parallel
Strand 3
A
277 278anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 285first strand
Strand 2
A
316 318parallel
Strand 3
A
338 342parallel
Strand 4
A
388 395parallel
Strand 5
A
424 428parallel
Strand 6
A
443 447parallel
Strand 7
A
481 485parallel
Strand 8
A
524 530parallel
Strand 9
A
281 285parallel
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