Analysis of interatomic Contacts of Structural Units in PDB entry:
6XYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XYE entry

There are 6 chains in PDB entry 6XYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 136	ASN 209
B	GLY 227	ASP 583
C	GLN 136	ASN 209
D	GLY 227	ASP 583
E	GLN 136	ASN 209
F	GLY 227	ASP 583

There are 39 helices in PDB entry 6XYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	139	142	Right-handed 310
Helix 2	2	A	175	177	Right-handed 310
Helix 3	3	A	182	207	Right-handed alpha
Helix 4	4	B	232	235	Right-handed alpha
Helix 5	5	B	240	251	Right-handed alpha
Helix 6	6	B	260	268	Right-handed alpha
Helix 7	7	B	291	296	Right-handed alpha
Helix 8	8	B	300	304	Right-handed 310
Helix 9	9	B	307	328	Right-handed alpha
Helix 10	10	B	355	360	Right-handed alpha
Helix 11	11	B	368	372	Right-handed alpha
Helix 12	12	B	465	473	Right-handed alpha
Helix 13	13	B	568	582	Right-handed alpha
Helix 14	14	C	139	142	Right-handed 310
Helix 15	15	C	175	177	Right-handed 310
Helix 16	16	C	182	207	Right-handed alpha
Helix 17	17	D	232	235	Right-handed alpha
Helix 18	18	D	240	251	Right-handed alpha
Helix 19	19	D	260	268	Right-handed alpha
Helix 20	20	D	291	296	Right-handed alpha
Helix 21	21	D	300	304	Right-handed 310
Helix 22	22	D	307	328	Right-handed alpha
Helix 23	23	D	355	360	Right-handed alpha
Helix 24	24	D	368	372	Right-handed alpha
Helix 25	25	D	465	473	Right-handed alpha
Helix 26	26	D	568	582	Right-handed alpha
Helix 27	27	E	139	142	Right-handed 310
Helix 28	28	E	175	177	Right-handed 310
Helix 29	29	E	182	207	Right-handed alpha
Helix 30	30	F	232	235	Right-handed alpha
Helix 31	31	F	240	251	Right-handed alpha
Helix 32	32	F	260	268	Right-handed alpha
Helix 33	33	F	291	296	Right-handed alpha
Helix 34	34	F	300	304	Right-handed 310
Helix 35	35	F	307	328	Right-handed alpha
Helix 36	36	F	355	360	Right-handed alpha
Helix 37	37	F	368	372	Right-handed alpha
Helix 38	38	F	465	473	Right-handed alpha
Helix 39	39	F	568	582	Right-handed alpha

There are 24 sheets in PDB entry 6XYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	452	455	anti-parallel
Strand 3	A	151	156	parallel
Strand 4	B	406	410	anti-parallel
Strand 5	B	430	434	anti-parallel
Strand 6	B	437	439	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	B	399	402	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	169	first strand
Strand 2	B	390	396	anti-parallel
Strand 3	B	379	385	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	276	first strand
Strand 2	B	284	287	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	418	first strand
Strand 2	B	421	423	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	425	first strand
Strand 2	B	480	482	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	494	first strand
Strand 2	B	497	500	anti-parallel
Strand 3	B	525	527	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	534	537	anti-parallel
Strand 3	B	541	543	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	448	first strand
Strand 2	D	452	455	anti-parallel
Strand 3	C	151	156	parallel
Strand 4	D	406	410	anti-parallel
Strand 5	D	430	434	anti-parallel
Strand 6	D	437	439	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	D	399	402	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	169	first strand
Strand 2	D	390	396	anti-parallel
Strand 3	D	379	385	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	276	first strand
Strand 2	D	284	287	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	418	first strand
Strand 2	D	421	423	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	425	first strand
Strand 2	D	480	482	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	494	first strand
Strand 2	D	497	500	anti-parallel
Strand 3	D	525	527	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	509	first strand
Strand 2	D	534	537	anti-parallel
Strand 3	D	541	543	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	448	first strand
Strand 2	F	452	455	anti-parallel
Strand 3	E	151	156	parallel
Strand 4	F	406	410	anti-parallel
Strand 5	F	430	434	anti-parallel
Strand 6	F	437	439	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	159	first strand
Strand 2	F	399	402	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	169	first strand
Strand 2	F	390	396	anti-parallel
Strand 3	F	379	385	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	276	first strand
Strand 2	F	284	287	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	416	418	first strand
Strand 2	F	421	423	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	424	425	first strand
Strand 2	F	480	482	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	491	494	first strand
Strand 2	F	497	500	anti-parallel
Strand 3	F	525	527	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	507	509	first strand
Strand 2	F	534	537	anti-parallel
Strand 3	F	541	543	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XYE