Analysis of interatomic Contacts of Structural Units in PDB entry:
6XYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XYR entry

There is 1 chain in PDB entry 6XYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4ALA 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6XYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 24Right-handed alpha
Helix 2
AA2
A
24 47Right-handed alpha
Helix 3
AA3
A
73 86Right-handed alpha
Helix 4
AA4
A
94 116Right-handed alpha
Helix 5
AA5
A
119 126Right-handed alpha
Helix 6
AA6
A
127 148Right-handed alpha
Helix 7
AA7
A
149 158Right-handed alpha
Helix 8
AA8
A
160 169Right-handed alpha
Helix 9
AA9
A
171 177Right-handed alpha
Helix 10
AB1
A
177 191Right-handed alpha
Helix 11
AB2
A
193 198Right-handed alpha
Helix 12
AB3
A
199 203Right-handed 310
Helix 13
AB4
A
218 233Right-handed alpha
Helix 14
AB5
A
241 252Right-handed alpha
Helix 15
AB6
A
257 269Right-handed alpha
Helix 16
AB7
A
277 287Right-handed alpha
Helix 17
AB8
A
293 306Right-handed alpha
Helix 18
AB9
A
314 326Right-handed alpha
Helix 19
AC1
A
330 342Right-handed alpha
Helix 20
AC2
A
351 359Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6XYR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
66 69anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
349 350anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il