Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y09 entry

There are 4 chains in PDB entry 6Y09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 30LEU 205
C
 MET 140ALA 225
B
 ARG 30PRO 204
D
 MET 140ALA 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6Y09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
92 97Right-handed alpha
Helix 3
AA3
A
99 105Right-handed alpha
Helix 4
AA4
A
118 124Right-handed alpha
Helix 5
AA5
A
124 136Right-handed alpha
Helix 6
AA6
A
152 156Right-handed 310
Helix 7
AA7
A
159 170Right-handed alpha
Helix 8
AA8
A
187 202Right-handed alpha
Helix 9
AA9
C
144 168Right-handed alpha
Helix 10
AB1
C
171 225Right-handed alpha
Helix 11
AB2
B
45 56Right-handed alpha
Helix 12
AB3
B
92 96Right-handed 310
Helix 13
AB4
B
99 105Right-handed alpha
Helix 14
AB5
B
118 124Right-handed alpha
Helix 15
AB6
B
124 136Right-handed alpha
Helix 16
AB7
B
152 156Right-handed 310
Helix 17
AB8
B
159 170Right-handed alpha
Helix 18
AB9
B
187 201Right-handed alpha
Helix 19
AC1
D
144 149Right-handed 310
Helix 20
AC2
D
150 158Right-handed alpha
Helix 21
AC3
D
159 161Right-handed 310
Helix 22
AC4
D
163 173Right-handed alpha
Helix 23
AC5
D
175 225Right-handed alpha
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There are 2 sheets in PDB entry 6Y09. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 77first strand
Strand 2
A
80 89anti-parallel
Strand 3
A
32 40parallel
Strand 4
A
109 115parallel
Strand 5
A
143 148parallel
Strand 6
A
174 176parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 77first strand
Strand 2
B
80 89anti-parallel
Strand 3
B
32 40parallel
Strand 4
B
109 115parallel
Strand 5
B
143 148parallel
Strand 6
B
174 176parallel
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