Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y0F entry

There are 2 chains in PDB entry 6Y0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 37	SER 757
B	MET 39	LYS 532

There are 78 helices in PDB entry 6Y0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	50	Right-handed alpha
Helix 2	AA2	A	91	98	Right-handed alpha
Helix 3	AA3	A	198	205	Right-handed alpha
Helix 4	AA4	A	283	288	Right-handed alpha
Helix 5	AA5	A	333	335	Right-handed 310
Helix 6	AA6	A	414	418	Right-handed 310
Helix 7	AA7	A	457	459	Right-handed 310
Helix 8	AA8	A	491	498	Right-handed alpha
Helix 9	AA9	A	499	501	Right-handed 310
Helix 10	AB1	A	556	564	Right-handed alpha
Helix 11	AB2	A	581	586	Right-handed alpha
Helix 12	AB3	A	587	589	Right-handed 310
Helix 13	AB4	A	594	609	Right-handed alpha
Helix 14	AB5	A	624	635	Right-handed alpha
Helix 15	AB6	A	652	656	Right-handed 310
Helix 16	AB7	A	657	665	Right-handed alpha
Helix 17	AB8	A	673	680	Right-handed alpha
Helix 18	AB9	A	682	690	Right-handed 310
Helix 19	AC1	A	707	720	Right-handed alpha
Helix 20	AC2	A	738	756	Right-handed alpha
Helix 21	AC3	B	43	49	Right-handed alpha
Helix 22	AC4	B	91	98	Right-handed alpha
Helix 23	AC5	B	198	205	Right-handed alpha
Helix 24	AC6	B	283	288	Right-handed alpha
Helix 25	AC7	B	333	335	Right-handed 310
Helix 26	AC8	B	414	418	Right-handed 310
Helix 27	AC9	B	457	459	Right-handed 310
Helix 28	AD1	B	491	498	Right-handed alpha
Helix 29	AD2	B	499	501	Right-handed 310
Helix 30	AD3	B	556	564	Right-handed alpha
Helix 31	AD4	B	581	586	Right-handed alpha
Helix 32	AD5	B	587	589	Right-handed 310
Helix 33	AD6	B	594	609	Right-handed alpha
Helix 34	AD7	B	624	635	Right-handed alpha
Helix 35	AD8	B	652	656	Right-handed 310
Helix 36	AD9	B	657	665	Right-handed alpha
Helix 37	AE1	B	673	680	Right-handed alpha
Helix 38	AE2	B	682	690	Right-handed 310
Helix 39	AE3	B	707	720	Right-handed alpha
Helix 40	AE4	B	738	756	Right-handed alpha
Helix 41	AE5	C	43	50	Right-handed alpha
Helix 42	AE6	C	91	98	Right-handed alpha
Helix 43	AE7	C	198	205	Right-handed alpha
Helix 44	AE8	C	333	335	Right-handed 310
Helix 45	AE9	C	414	418	Right-handed 310
Helix 46	AF1	C	457	459	Right-handed 310
Helix 47	AF2	C	491	498	Right-handed alpha
Helix 48	AF3	C	499	501	Right-handed 310
Helix 49	AF4	C	556	564	Right-handed alpha
Helix 50	AF5	C	581	586	Right-handed alpha
Helix 51	AF6	C	587	589	Right-handed 310
Helix 52	AF7	C	594	609	Right-handed alpha
Helix 53	AF8	C	624	635	Right-handed alpha
Helix 54	AF9	C	657	666	Right-handed alpha
Helix 55	AG1	C	673	680	Right-handed alpha
Helix 56	AG2	C	682	690	Right-handed 310
Helix 57	AG3	C	707	720	Right-handed alpha
Helix 58	AG4	C	738	756	Right-handed alpha
Helix 59	AG5	D	43	49	Right-handed alpha
Helix 60	AG6	D	91	98	Right-handed alpha
Helix 61	AG7	D	198	205	Right-handed alpha
Helix 62	AG8	D	283	288	Right-handed alpha
Helix 63	AG9	D	333	335	Right-handed 310
Helix 64	AH1	D	414	418	Right-handed 310
Helix 65	AH2	D	457	459	Right-handed 310
Helix 66	AH3	D	491	498	Right-handed alpha
Helix 67	AH4	D	499	501	Right-handed 310
Helix 68	AH5	D	556	564	Right-handed alpha
Helix 69	AH6	D	581	586	Right-handed alpha
Helix 70	AH7	D	587	589	Right-handed 310
Helix 71	AH8	D	594	609	Right-handed alpha
Helix 72	AH9	D	624	635	Right-handed alpha
Helix 73	AI1	D	652	656	Right-handed 310
Helix 74	AI2	D	657	666	Right-handed alpha
Helix 75	AI3	D	673	680	Right-handed alpha
Helix 76	AI4	D	682	690	Right-handed 310
Helix 77	AI5	D	707	720	Right-handed alpha
Helix 78	AI6	D	738	756	Right-handed alpha

There are 48 sheets in PDB entry 6Y0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	66	70	anti-parallel
Strand 3	A	76	80	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	120	anti-parallel
Strand 3	A	126	134	anti-parallel
Strand 4	A	139	140	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	169	173	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	212	214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	261	268	anti-parallel
Strand 4	A	278	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	238	first strand
Strand 2	A	246	251	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	300	first strand
Strand 2	A	303	310	anti-parallel
Strand 3	A	315	323	anti-parallel
Strand 4	A	330	331	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	300	first strand
Strand 2	A	303	310	anti-parallel
Strand 3	A	315	323	anti-parallel
Strand 4	A	337	341	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	375	380	anti-parallel
Strand 4	A	388	389	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	403	first strand
Strand 2	A	407	412	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	436	438	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	461	466	anti-parallel
Strand 3	A	473	478	anti-parallel
Strand 4	A	484	489	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	513	first strand
Strand 2	A	516	524	anti-parallel
Strand 3	A	568	573	anti-parallel
Strand 4	A	534	540	parallel
Strand 5	A	613	623	parallel
Strand 6	A	643	647	parallel
Strand 7	A	693	699	parallel
Strand 8	A	725	729	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	66	70	anti-parallel
Strand 3	B	76	80	anti-parallel
Strand 4	B	86	90	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	120	anti-parallel
Strand 3	B	126	134	anti-parallel
Strand 4	B	139	140	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	169	173	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	212	214	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	261	268	anti-parallel
Strand 4	B	278	279	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	238	first strand
Strand 2	B	246	251	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	300	first strand
Strand 2	B	303	310	anti-parallel
Strand 3	B	315	324	anti-parallel
Strand 4	B	329	331	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	300	first strand
Strand 2	B	303	310	anti-parallel
Strand 3	B	315	324	anti-parallel
Strand 4	B	337	341	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	375	380	anti-parallel
Strand 4	B	388	389	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	403	first strand
Strand 2	B	407	412	anti-parallel
Strand 3	B	423	428	anti-parallel
Strand 4	B	436	438	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	455	first strand
Strand 2	B	461	466	anti-parallel
Strand 3	B	473	478	anti-parallel
Strand 4	B	484	489	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	513	first strand
Strand 2	B	516	524	anti-parallel
Strand 3	B	568	573	anti-parallel
Strand 4	B	534	540	parallel
Strand 5	B	613	623	parallel
Strand 6	B	643	647	parallel
Strand 7	B	693	699	parallel
Strand 8	B	725	729	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	66	70	anti-parallel
Strand 3	C	76	80	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	111	120	anti-parallel
Strand 3	C	126	134	anti-parallel
Strand 4	C	139	140	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	169	173	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	220	227	anti-parallel
Strand 3	C	212	214	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	220	227	anti-parallel
Strand 3	C	261	268	anti-parallel
Strand 4	C	278	279	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	238	first strand
Strand 2	C	246	251	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	300	first strand
Strand 2	C	303	310	anti-parallel
Strand 3	C	315	323	anti-parallel
Strand 4	C	330	331	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	300	first strand
Strand 2	C	303	310	anti-parallel
Strand 3	C	315	323	anti-parallel
Strand 4	C	337	341	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	357	first strand
Strand 2	C	364	369	anti-parallel
Strand 3	C	375	380	anti-parallel
Strand 4	C	388	389	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	403	first strand
Strand 2	C	407	412	anti-parallel
Strand 3	C	423	428	anti-parallel
Strand 4	C	436	438	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	455	first strand
Strand 2	C	461	466	anti-parallel
Strand 3	C	473	478	anti-parallel
Strand 4	C	484	489	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	513	first strand
Strand 2	C	516	524	anti-parallel
Strand 3	C	568	573	anti-parallel
Strand 4	C	534	540	parallel
Strand 5	C	613	623	parallel
Strand 6	C	643	647	parallel
Strand 7	C	693	699	parallel
Strand 8	C	725	729	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	61	first strand
Strand 2	D	66	70	anti-parallel
Strand 3	D	76	80	anti-parallel
Strand 4	D	86	90	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	105	first strand
Strand 2	D	111	120	anti-parallel
Strand 3	D	126	134	anti-parallel
Strand 4	D	139	140	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	155	first strand
Strand 2	D	162	166	anti-parallel
Strand 3	D	169	173	anti-parallel
Strand 4	D	181	182	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	220	227	anti-parallel
Strand 3	D	212	214	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	220	227	anti-parallel
Strand 3	D	261	268	anti-parallel
Strand 4	D	278	279	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	238	first strand
Strand 2	D	246	251	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	300	first strand
Strand 2	D	303	310	anti-parallel
Strand 3	D	315	324	anti-parallel
Strand 4	D	329	331	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	300	first strand
Strand 2	D	303	310	anti-parallel
Strand 3	D	315	324	anti-parallel
Strand 4	D	337	341	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	356	357	first strand
Strand 2	D	364	369	anti-parallel
Strand 3	D	375	380	anti-parallel
Strand 4	D	388	389	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	403	first strand
Strand 2	D	407	412	anti-parallel
Strand 3	D	423	428	anti-parallel
Strand 4	D	436	438	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	455	first strand
Strand 2	D	461	466	anti-parallel
Strand 3	D	473	478	anti-parallel
Strand 4	D	484	489	anti-parallel

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There are 8 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	513	first strand
Strand 2	D	516	524	anti-parallel
Strand 3	D	568	573	anti-parallel
Strand 4	D	534	540	parallel
Strand 5	D	613	623	parallel
Strand 6	D	643	647	parallel
Strand 7	D	693	699	parallel
Strand 8	D	725	729	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y0F