Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y1G entry

There are 8 chains in PDB entry 6Y1G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4CYS 63
A
 SER 67ALA 227
B
 GLY 4CYS 63
B
 SER 67ALA 227
C
 GLY 4CYS 63
C
 SER 67ALA 227
D
 GLY 4CYS 63
D
 SER 67ALA 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6Y1G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 63Right-handed 310
Helix 2
AA2
A
81 85Right-handed 310
Helix 3
AA3
A
183 187Right-handed 310
Helix 4
AA4
B
55 63Right-handed 310
Helix 5
AA5
B
81 85Right-handed 310
Helix 6
AA6
B
183 187Right-handed 310
Helix 7
AA7
C
55 63Right-handed 310
Helix 8
AA8
C
81 85Right-handed 310
Helix 9
AA9
C
183 187Right-handed 310
Helix 10
AB1
D
55 63Right-handed 310
Helix 11
AB2
D
79 84Right-handed alpha
Helix 12
AB3
D
183 187Right-handed 310
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There are 4 sheets in PDB entry 6Y1G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
209 219parallel
Strand 3
A
193 205anti-parallel
Strand 4
A
144 151anti-parallel
Strand 5
A
154 165anti-parallel
Strand 6
A
168 180anti-parallel
Strand 7
A
89 97anti-parallel
Strand 8
A
102 112anti-parallel
Strand 9
A
115 125anti-parallel
Strand 10
A
10 20parallel
Strand 11
A
23 34anti-parallel
Strand 12
A
39 48anti-parallel
Strand 13
A
209 219anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
209 219parallel
Strand 3
B
193 205anti-parallel
Strand 4
B
144 151anti-parallel
Strand 5
B
154 165anti-parallel
Strand 6
B
168 180anti-parallel
Strand 7
B
89 97anti-parallel
Strand 8
B
102 112anti-parallel
Strand 9
B
115 125anti-parallel
Strand 10
B
10 20parallel
Strand 11
B
23 34anti-parallel
Strand 12
B
39 48anti-parallel
Strand 13
B
209 219anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 73first strand
Strand 2
C
209 219parallel
Strand 3
C
193 205anti-parallel
Strand 4
C
144 151anti-parallel
Strand 5
C
154 165anti-parallel
Strand 6
C
168 180anti-parallel
Strand 7
C
89 97anti-parallel
Strand 8
C
102 112anti-parallel
Strand 9
C
115 125anti-parallel
Strand 10
C
10 20parallel
Strand 11
C
23 34anti-parallel
Strand 12
C
39 48anti-parallel
Strand 13
C
209 219anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 73first strand
Strand 2
D
209 219parallel
Strand 3
D
193 205anti-parallel
Strand 4
D
144 151anti-parallel
Strand 5
D
154 165anti-parallel
Strand 6
D
168 180anti-parallel
Strand 7
D
89 97anti-parallel
Strand 8
D
102 112anti-parallel
Strand 9
D
115 125anti-parallel
Strand 10
D
10 20parallel
Strand 11
D
23 34anti-parallel
Strand 12
D
39 48anti-parallel
Strand 13
D
209 219anti-parallel
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