Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y1I entry

There are 3 chains in PDB entry 6Y1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16VAL 365
B
 GLY 16VAL 365
C
 GLY 16VAL 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6Y1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 35Right-handed alpha
Helix 2
AA2
A
77 86Right-handed alpha
Helix 3
AA3
A
86 95Right-handed alpha
Helix 4
AA4
A
110 116Right-handed alpha
Helix 5
AA5
A
134 150Right-handed alpha
Helix 6
AA6
A
208 227Right-handed alpha
Helix 7
AA7
A
231 233Right-handed 310
Helix 8
AA8
A
287 304Right-handed alpha
Helix 9
AA9
A
310 313Right-handed 310
Helix 10
AB1
A
314 320Right-handed alpha
Helix 11
AB2
A
321 324Right-handed 310
Helix 12
AB3
A
339 341Right-handed 310
Helix 13
AB4
A
342 357Right-handed alpha
Helix 14
AB5
B
29 35Right-handed alpha
Helix 15
AB6
B
77 95Right-handed alpha
Helix 16
AB7
B
110 116Right-handed alpha
Helix 17
AB8
B
134 150Right-handed alpha
Helix 18
AB9
B
206 208Right-handed 310
Helix 19
AC1
B
209 227Right-handed alpha
Helix 20
AC2
B
231 233Right-handed 310
Helix 21
AC3
B
287 304Right-handed alpha
Helix 22
AC4
B
310 313Right-handed 310
Helix 23
AC5
B
314 320Right-handed alpha
Helix 24
AC6
B
321 324Right-handed 310
Helix 25
AC7
B
339 341Right-handed 310
Helix 26
AC8
B
342 357Right-handed alpha
Helix 27
AC9
C
29 35Right-handed alpha
Helix 28
AD1
C
77 86Right-handed alpha
Helix 29
AD2
C
86 96Right-handed alpha
Helix 30
AD3
C
110 116Right-handed alpha
Helix 31
AD4
C
134 150Right-handed alpha
Helix 32
AD5
C
206 208Right-handed 310
Helix 33
AD6
C
209 227Right-handed alpha
Helix 34
AD7
C
231 233Right-handed 310
Helix 35
AD8
C
287 304Right-handed alpha
Helix 36
AD9
C
310 313Right-handed 310
Helix 37
AE1
C
314 320Right-handed alpha
Helix 38
AE2
C
321 324Right-handed 310
Helix 39
AE3
C
339 341Right-handed 310
Helix 40
AE4
C
342 357Right-handed alpha
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There are 12 sheets in PDB entry 6Y1I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 104parallel
Strand 5
A
257 265parallel
Strand 6
A
235 246anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
167 170anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 104parallel
Strand 5
A
257 265parallel
Strand 6
A
235 246anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
202 204anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
65 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
195 196anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 104parallel
Strand 5
B
257 265parallel
Strand 6
B
235 246anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
167 170anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 104parallel
Strand 5
B
257 265parallel
Strand 6
B
235 246anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
202 204anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
49 51anti-parallel
Strand 3
B
66 67anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 186first strand
Strand 2
B
194 196anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
19 25parallel
Strand 3
C
330 336parallel
Strand 4
C
98 104parallel
Strand 5
C
257 265parallel
Strand 6
C
235 246anti-parallel
Strand 7
C
153 164anti-parallel
Strand 8
C
167 170anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
19 25parallel
Strand 3
C
330 336parallel
Strand 4
C
98 104parallel
Strand 5
C
257 265parallel
Strand 6
C
235 246anti-parallel
Strand 7
C
153 164anti-parallel
Strand 8
C
202 204anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 44first strand
Strand 2
C
49 52anti-parallel
Strand 3
C
65 67anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 185first strand
Strand 2
C
195 196anti-parallel
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