Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y1V entry

There are 2 chains in PDB entry 6Y1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8PHE 312
B
 TYR 7VAL 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6Y1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
43 50Right-handed alpha
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
71 82Right-handed alpha
Helix 5
AA5
A
82 91Right-handed alpha
Helix 6
AA6
A
105 121Right-handed alpha
Helix 7
AA7
A
133 136Right-handed 310
Helix 8
AA8
A
137 154Right-handed alpha
Helix 9
AA9
A
163 167Right-handed alpha
Helix 10
AB1
A
175 200Right-handed alpha
Helix 11
AB2
A
207 216Right-handed alpha
Helix 12
AB3
A
232 243Right-handed alpha
Helix 13
AB4
A
244 248Right-handed 310
Helix 14
AB5
A
250 254Right-handed 310
Helix 15
AB6
A
268 283Right-handed alpha
Helix 16
AB7
A
297 300Right-handed 310
Helix 17
AB8
B
17 30Right-handed alpha
Helix 18
AB9
B
71 82Right-handed alpha
Helix 19
AC1
B
82 91Right-handed alpha
Helix 20
AC2
B
105 121Right-handed alpha
Helix 21
AC3
B
133 137Right-handed 310
Helix 22
AC4
B
142 155Right-handed alpha
Helix 23
AC5
B
164 169Right-handed 310
Helix 24
AC6
B
175 200Right-handed alpha
Helix 25
AC7
B
207 216Right-handed alpha
Helix 26
AC8
B
232 243Right-handed alpha
Helix 27
AC9
B
244 248Right-handed 310
Helix 28
AD1
B
268 283Right-handed alpha
Helix 29
AD2
B
297 300Right-handed 310
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There are 2 sheets in PDB entry 6Y1V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 295first strand
Strand 2
A
256 263parallel
Strand 3
A
302 310anti-parallel
Strand 4
A
219 229anti-parallel
Strand 5
A
157 162parallel
Strand 6
A
124 131parallel
Strand 7
A
95 101parallel
Strand 8
A
11 16parallel
Strand 9
A
36 41parallel
Strand 10
A
54 58parallel
Strand 11
B
46 48anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
36 41parallel
Strand 3
B
11 16parallel
Strand 4
B
95 99parallel
Strand 5
B
124 131parallel
Strand 6
B
157 162parallel
Strand 7
B
219 229parallel
Strand 8
B
302 310anti-parallel
Strand 9
B
256 263anti-parallel
Strand 10
B
288 295parallel
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