Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y1W entry

There are 2 chains in PDB entry 6Y1W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 6	ALA 510
B	ARG 11	PRO 503

There are 40 helices in PDB entry 6Y1W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	21	37	Right-handed alpha
Helix 3	AA3	A	61	71	Right-handed alpha
Helix 4	AA4	A	73	81	Right-handed alpha
Helix 5	AA5	A	116	127	Right-handed alpha
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	137	146	Right-handed alpha
Helix 8	AA8	A	151	155	Right-handed 310
Helix 9	AA9	A	164	178	Right-handed alpha
Helix 10	AB1	A	219	223	Right-handed 310
Helix 11	AB2	A	292	304	Right-handed alpha
Helix 12	AB3	A	334	336	Right-handed 310
Helix 13	AB4	A	341	345	Right-handed 310
Helix 14	AB5	A	346	361	Right-handed alpha
Helix 15	AB6	A	367	395	Right-handed alpha
Helix 16	AB7	A	401	410	Right-handed alpha
Helix 17	AB8	A	413	427	Right-handed alpha
Helix 18	AB9	A	438	449	Right-handed alpha
Helix 19	AC1	A	457	463	Right-handed 310
Helix 20	AC2	A	464	484	Right-handed alpha
Helix 21	AC3	A	488	497	Right-handed alpha
Helix 22	AC4	B	21	37	Right-handed alpha
Helix 23	AC5	B	61	70	Right-handed alpha
Helix 24	AC6	B	73	81	Right-handed alpha
Helix 25	AC7	B	116	127	Right-handed alpha
Helix 26	AC8	B	132	136	Right-handed 310
Helix 27	AC9	B	137	146	Right-handed alpha
Helix 28	AD1	B	151	155	Right-handed 310
Helix 29	AD2	B	164	178	Right-handed alpha
Helix 30	AD3	B	292	304	Right-handed alpha
Helix 31	AD4	B	334	336	Right-handed 310
Helix 32	AD5	B	341	345	Right-handed 310
Helix 33	AD6	B	346	361	Right-handed alpha
Helix 34	AD7	B	367	395	Right-handed alpha
Helix 35	AD8	B	401	410	Right-handed alpha
Helix 36	AD9	B	413	427	Right-handed alpha
Helix 37	AE1	B	438	449	Right-handed alpha
Helix 38	AE2	B	457	463	Right-handed 310
Helix 39	AE3	B	464	485	Right-handed alpha
Helix 40	AE4	B	488	497	Right-handed alpha

There are 10 sheets in PDB entry 6Y1W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	184	first strand
Strand 2	A	41	46	parallel
Strand 3	A	15	19	parallel
Strand 4	A	214	217	parallel
Strand 5	A	330	332	parallel
Strand 6	A	326	327	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	159	163	anti-parallel
Strand 3	A	84	86	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	88	96	anti-parallel
Strand 3	A	260	265	parallel
Strand 4	A	269	275	anti-parallel
Strand 5	A	280	286	anti-parallel
Strand 6	A	245	251	anti-parallel
Strand 7	A	313	316	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	199	204	anti-parallel
Strand 3	A	209	211	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	320	322	anti-parallel
Strand 3	A	338	339	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	184	first strand
Strand 2	B	41	46	parallel
Strand 3	B	15	19	parallel
Strand 4	B	214	217	parallel
Strand 5	B	330	332	parallel
Strand 6	B	326	327	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	159	163	anti-parallel
Strand 3	B	84	86	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	104	first strand
Strand 2	B	88	96	anti-parallel
Strand 3	B	260	265	parallel
Strand 4	B	269	275	anti-parallel
Strand 5	B	280	286	anti-parallel
Strand 6	B	245	251	anti-parallel
Strand 7	B	313	316	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	204	anti-parallel
Strand 3	B	209	211	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	320	322	anti-parallel
Strand 3	B	338	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y1W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1W