Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y1X entry

There are 2 chains in PDB entry 6Y1X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20ARG 271
B
 GLN 20ARG 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6Y1X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 26Right-handed alpha
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
76 91Right-handed alpha
Helix 4
AA4
A
104 107Right-handed 310
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
135 147Right-handed alpha
Helix 7
AA7
A
159 164Right-handed alpha
Helix 8
AA8
A
179 200Right-handed alpha
Helix 9
AA9
A
218 230Right-handed alpha
Helix 10
AB1
A
242 246Right-handed 310
Helix 11
AB2
A
252 264Right-handed alpha
Helix 12
AB3
B
21 26Right-handed alpha
Helix 13
AB4
B
31 36Right-handed alpha
Helix 14
AB5
B
76 91Right-handed alpha
Helix 15
AB6
B
104 107Right-handed 310
Helix 16
AB7
B
108 122Right-handed alpha
Helix 17
AB8
B
135 147Right-handed alpha
Helix 18
AB9
B
159 164Right-handed alpha
Helix 19
AC1
B
179 200Right-handed alpha
Helix 20
AC2
B
218 230Right-handed alpha
Helix 21
AC3
B
242 246Right-handed 310
Helix 22
AC4
B
252 264Right-handed alpha
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There are 4 sheets in PDB entry 6Y1X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
94 99parallel
Strand 3
A
126 131parallel
Strand 4
A
150 154parallel
Strand 5
A
203 210parallel
Strand 6
A
233 238parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
175 178anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
94 99parallel
Strand 3
B
126 131parallel
Strand 4
B
150 154parallel
Strand 5
B
203 210parallel
Strand 6
B
233 238parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
175 178anti-parallel
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