Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y1Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y1Z entry

There are 5 chains in PDB entry 6Y1Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8ILE 458
D
 THR 8ILE 458
B
 THR 8ILE 458
C
 THR 8ILE 458
E
 THR 8ILE 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6Y1Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
91 93Right-handed 310
Helix 3
AA3
A
170 176Right-handed alpha
Helix 4
AA4
A
220 222Right-handed 310
Helix 5
AA5
A
223 242Right-handed alpha
Helix 6
AA6
A
243 244Right-handed 310
Helix 7
AA7
A
245 249Right-handed 310
Helix 8
AA8
A
250 270Right-handed alpha
Helix 9
AA9
A
282 309Right-handed alpha
Helix 10
AB1
A
318 329Right-handed alpha
Helix 11
AB2
A
398 458Right-handed alpha
Helix 12
AB3
D
12 21Right-handed alpha
Helix 13
AB4
D
91 93Right-handed 310
Helix 14
AB5
D
170 176Right-handed alpha
Helix 15
AB6
D
220 222Right-handed 310
Helix 16
AB7
D
223 242Right-handed alpha
Helix 17
AB8
D
243 244Right-handed 310
Helix 18
AB9
D
245 249Right-handed 310
Helix 19
AC1
D
250 270Right-handed alpha
Helix 20
AC2
D
282 309Right-handed alpha
Helix 21
AC3
D
318 329Right-handed alpha
Helix 22
AC4
D
398 458Right-handed alpha
Helix 23
AC5
B
12 21Right-handed alpha
Helix 24
AC6
B
91 93Right-handed 310
Helix 25
AC7
B
170 176Right-handed alpha
Helix 26
AC8
B
220 222Right-handed 310
Helix 27
AC9
B
223 242Right-handed alpha
Helix 28
AD1
B
243 244Right-handed 310
Helix 29
AD2
B
245 249Right-handed 310
Helix 30
AD3
B
250 270Right-handed alpha
Helix 31
AD4
B
282 309Right-handed alpha
Helix 32
AD5
B
318 329Right-handed alpha
Helix 33
AD6
B
398 458Right-handed alpha
Helix 34
AD7
C
12 21Right-handed alpha
Helix 35
AD8
C
91 93Right-handed 310
Helix 36
AD9
C
170 176Right-handed alpha
Helix 37
AE1
C
220 222Right-handed 310
Helix 38
AE2
C
223 242Right-handed alpha
Helix 39
AE3
C
243 244Right-handed 310
Helix 40
AE4
C
245 249Right-handed 310
Helix 41
AE5
C
250 270Right-handed alpha
Helix 42
AE6
C
282 309Right-handed alpha
Helix 43
AE7
C
318 329Right-handed alpha
Helix 44
AE8
C
398 458Right-handed alpha
Helix 45
AE9
E
12 21Right-handed alpha
Helix 46
AF1
E
91 93Right-handed 310
Helix 47
AF2
E
170 176Right-handed alpha
Helix 48
AF3
E
220 222Right-handed 310
Helix 49
AF4
E
223 242Right-handed alpha
Helix 50
AF5
E
243 244Right-handed 310
Helix 51
AF6
E
245 249Right-handed 310
Helix 52
AF7
E
250 270Right-handed alpha
Helix 53
AF8
E
282 309Right-handed alpha
Helix 54
AF9
E
318 329Right-handed alpha
Helix 55
AG1
E
398 458Right-handed alpha
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There are 10 sheets in PDB entry 6Y1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
122 134anti-parallel
Strand 4
A
57 69anti-parallel
Strand 5
A
37 52anti-parallel
Strand 6
A
163 167parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
146 155anti-parallel
Strand 3
A
205 218anti-parallel
Strand 4
A
187 202anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 89first strand
Strand 2
D
114 118anti-parallel
Strand 3
D
122 134anti-parallel
Strand 4
D
57 69anti-parallel
Strand 5
D
37 52anti-parallel
Strand 6
D
163 167parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
98 100first strand
Strand 2
D
146 155anti-parallel
Strand 3
D
205 218anti-parallel
Strand 4
D
187 202anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
122 134anti-parallel
Strand 4
B
57 69anti-parallel
Strand 5
B
37 52anti-parallel
Strand 6
B
163 167parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
146 155anti-parallel
Strand 3
B
205 218anti-parallel
Strand 4
B
187 202anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 89first strand
Strand 2
C
114 118anti-parallel
Strand 3
C
122 134anti-parallel
Strand 4
C
57 69anti-parallel
Strand 5
C
37 52anti-parallel
Strand 6
C
163 167parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 100first strand
Strand 2
C
146 155anti-parallel
Strand 3
C
205 218anti-parallel
Strand 4
C
187 202anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 89first strand
Strand 2
E
114 118anti-parallel
Strand 3
E
122 134anti-parallel
Strand 4
E
57 69anti-parallel
Strand 5
E
37 52anti-parallel
Strand 6
E
163 167parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
98 100first strand
Strand 2
E
146 155anti-parallel
Strand 3
E
205 218anti-parallel
Strand 4
E
187 202anti-parallel
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