Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y23


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y23 entry

There are 3 chains in PDB entry 6Y23 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 574GLU 907
B
 ILE 574LEU 910
C
 ILE 574PHE 612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6Y23. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
606 610Right-handed 310
Helix 2
AA2
A
662 679Right-handed alpha
Helix 3
AA3
A
708 714Right-handed alpha
Helix 4
AA4
A
739 760Right-handed alpha
Helix 5
AA5
A
768 770Right-handed 310
Helix 6
AA6
A
776 778Right-handed 310
Helix 7
AA7
A
785 796Right-handed 310
Helix 8
AA8
A
806 810Right-handed 310
Helix 9
AA9
A
811 818Right-handed alpha
Helix 10
AB1
A
821 838Right-handed alpha
Helix 11
AB2
A
849 863Right-handed alpha
Helix 12
AB3
A
877 887Right-handed alpha
Helix 13
AB4
A
891 895Right-handed 310
Helix 14
AB5
A
897 907Right-handed alpha
Helix 15
AB6
B
606 608Right-handed 310
Helix 16
AB7
B
662 677Right-handed alpha
Helix 17
AB8
B
708 715Right-handed alpha
Helix 18
AB9
B
739 760Right-handed alpha
Helix 19
AC1
B
768 770Right-handed 310
Helix 20
AC2
B
785 796Right-handed 310
Helix 21
AC3
B
806 810Right-handed 310
Helix 22
AC4
B
811 818Right-handed alpha
Helix 23
AC5
B
821 838Right-handed alpha
Helix 24
AC6
B
849 863Right-handed alpha
Helix 25
AC7
B
877 888Right-handed alpha
Helix 26
AC8
B
891 895Right-handed 310
Helix 27
AC9
B
897 906Right-handed alpha
Helix 28
AD1
C
606 608Right-handed 310
Helix 29
AD2
C
662 678Right-handed alpha
Helix 30
AD3
C
708 714Right-handed alpha
Helix 31
AD4
C
739 760Right-handed alpha
Helix 32
AD5
C
768 770Right-handed 310
Helix 33
AD6
C
776 778Right-handed 310
Helix 34
AD7
C
785 796Right-handed 310
Helix 35
AD8
C
806 810Right-handed 310
Helix 36
AD9
C
811 818Right-handed alpha
Helix 37
AE1
C
821 838Right-handed alpha
Helix 38
AE2
C
849 863Right-handed alpha
Helix 39
AE3
C
877 888Right-handed alpha
Helix 40
AE4
C
891 895Right-handed 310
Helix 41
AE5
C
897 907Right-handed alpha
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There are 9 sheets in PDB entry 6Y23. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 618first strand
Strand 2
A
622 629anti-parallel
Strand 3
A
650 657anti-parallel
Strand 4
A
698 702anti-parallel
Strand 5
A
687 691anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
737 738parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 774first strand
Strand 2
A
780 782anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 618first strand
Strand 2
B
622 629anti-parallel
Strand 3
B
651 657anti-parallel
Strand 4
B
698 702anti-parallel
Strand 5
B
687 691anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
717 718first strand
Strand 2
B
737 738parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
772 774first strand
Strand 2
B
780 782anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
610 618first strand
Strand 2
C
622 629anti-parallel
Strand 3
C
651 657anti-parallel
Strand 4
C
698 702anti-parallel
Strand 5
C
687 691anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
717 718first strand
Strand 2
C
737 738parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
772 774first strand
Strand 2
C
780 782anti-parallel
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