Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y2H entry

There are 4 chains in PDB entry 6Y2H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 14SER 249
B
 GLY 12ARG 247
C
 GLY 12LEU 248
D
 ALA 13SER 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6Y2H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 46Right-handed alpha
Helix 2
AA2
A
84 96Right-handed alpha
Helix 3
AA3
A
108 113Right-handed 310
Helix 4
AA4
A
117 128Right-handed alpha
Helix 5
AA5
A
130 132Right-handed 310
Helix 6
AA6
A
133 154Right-handed alpha
Helix 7
AA7
A
156 161Right-handed alpha
Helix 8
AA8
A
182 204Right-handed alpha
Helix 9
AA9
A
211 223Right-handed alpha
Helix 10
AB1
A
224 229Right-handed alpha
Helix 11
AB2
A
233 241Right-handed alpha
Helix 12
AB3
B
32 46Right-handed alpha
Helix 13
AB4
B
84 96Right-handed alpha
Helix 14
AB5
B
108 113Right-handed 310
Helix 15
AB6
B
117 128Right-handed alpha
Helix 16
AB7
B
130 132Right-handed 310
Helix 17
AB8
B
133 154Right-handed alpha
Helix 18
AB9
B
182 204Right-handed alpha
Helix 19
AC1
B
211 223Right-handed alpha
Helix 20
AC2
B
224 229Right-handed alpha
Helix 21
AC3
B
233 241Right-handed alpha
Helix 22
AC4
C
32 46Right-handed alpha
Helix 23
AC5
C
84 96Right-handed alpha
Helix 24
AC6
C
108 113Right-handed 310
Helix 25
AC7
C
117 128Right-handed alpha
Helix 26
AC8
C
130 132Right-handed 310
Helix 27
AC9
C
133 154Right-handed alpha
Helix 28
AD1
C
182 204Right-handed alpha
Helix 29
AD2
C
211 223Right-handed alpha
Helix 30
AD3
C
224 229Right-handed alpha
Helix 31
AD4
C
233 241Right-handed alpha
Helix 32
AD5
D
32 46Right-handed alpha
Helix 33
AD6
D
84 96Right-handed alpha
Helix 34
AD7
D
108 113Right-handed 310
Helix 35
AD8
D
117 128Right-handed alpha
Helix 36
AD9
D
130 132Right-handed 310
Helix 37
AE1
D
133 154Right-handed alpha
Helix 38
AE2
D
182 204Right-handed alpha
Helix 39
AE3
D
211 223Right-handed alpha
Helix 40
AE4
D
224 229Right-handed alpha
Helix 41
AE5
D
233 241Right-handed alpha
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There are 4 sheets in PDB entry 6Y2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
16 21parallel
Strand 3
A
74 77anti-parallel
Strand 4
A
80 82anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
16 21parallel
Strand 3
B
74 77anti-parallel
Strand 4
B
80 82anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
16 21parallel
Strand 3
C
74 77anti-parallel
Strand 4
C
80 82anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
16 20parallel
Strand 3
D
74 77anti-parallel
Strand 4
D
80 82anti-parallel
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