Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y2K entry

There is 1 chain in PDB entry 6Y2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 656
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6Y2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
13 15Right-handed 310
Helix 3
AA3
A
16 28Right-handed alpha
Helix 4
AA4
A
38 43Right-handed alpha
Helix 5
AA5
A
51 64Right-handed alpha
Helix 6
AA6
A
78 85Right-handed alpha
Helix 7
AA7
A
86 89Right-handed 310
Helix 8
AA8
A
110 129Right-handed alpha
Helix 9
AA9
A
153 169Right-handed alpha
Helix 10
AB1
A
170 179Right-handed alpha
Helix 11
AB2
A
181 185Right-handed 310
Helix 12
AB3
A
189 193Right-handed 310
Helix 13
AB4
A
204 234Right-handed alpha
Helix 14
AB5
A
251 257Right-handed alpha
Helix 15
AB6
A
267 275Right-handed alpha
Helix 16
AB7
A
279 286Right-handed alpha
Helix 17
AB8
A
293 306Right-handed alpha
Helix 18
AB9
A
332 344Right-handed alpha
Helix 19
AC1
A
376 396Right-handed alpha
Helix 20
AC2
A
399 405Right-handed alpha
Helix 21
AC3
A
417 427Right-handed alpha
Helix 22
AC4
A
434 449Right-handed alpha
Helix 23
AC5
A
477 487Right-handed alpha
Helix 24
AC6
A
512 518Right-handed 310
Helix 25
AC7
A
584 599Right-handed alpha
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There are 5 sheets in PDB entry 6Y2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
29 34parallel
Strand 3
A
67 71parallel
Strand 4
A
134 138parallel
Strand 5
A
238 244parallel
Strand 6
A
261 266parallel
Strand 7
A
310 315parallel
Strand 8
A
348 352parallel
Strand 9
A
2 6parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
412 415parallel
Strand 3
A
467 470parallel
Strand 4
A
490 493parallel
Strand 5
A
576 579parallel
Strand 6
A
568 573anti-parallel
Strand 7
A
559 563anti-parallel
Strand 8
A
536 538anti-parallel
Strand 9
A
544 555anti-parallel
Strand 10
A
521 528anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
412 415parallel
Strand 3
A
467 470parallel
Strand 4
A
490 493parallel
Strand 5
A
576 579parallel
Strand 6
A
568 573anti-parallel
Strand 7
A
559 563anti-parallel
Strand 8
A
536 538anti-parallel
Strand 9
A
544 555anti-parallel
Strand 10
A
581 583anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 615first strand
Strand 2
A
618 623anti-parallel
Strand 3
A
649 655anti-parallel
Strand 4
A
636 640anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 630first strand
Strand 2
A
644 645anti-parallel
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