Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y2P entry

There are 4 chains in PDB entry 6Y2P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	VAL 357
B	ARG 4	VAL 357
C	MET 1	SER 120
D	MET 1	SER 120

There are 44 helices in PDB entry 6Y2P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	14	Right-handed 310
Helix 2	AA2	A	15	27	Right-handed alpha
Helix 3	AA3	A	77	90	Right-handed alpha
Helix 4	AA4	A	108	111	Right-handed 310
Helix 5	AA5	A	112	120	Right-handed alpha
Helix 6	AA6	A	169	182	Right-handed alpha
Helix 7	AA7	A	186	188	Right-handed 310
Helix 8	AA8	A	203	216	Right-handed alpha
Helix 9	AA9	A	217	219	Right-handed 310
Helix 10	AB1	A	223	238	Right-handed alpha
Helix 11	AB2	A	246	268	Right-handed alpha
Helix 12	AB3	A	292	297	Right-handed alpha
Helix 13	AB4	A	300	322	Right-handed alpha
Helix 14	AB5	A	327	331	Right-handed 310
Helix 15	AB6	A	336	357	Right-handed alpha
Helix 16	AB7	B	77	79	Right-handed 310
Helix 17	AB8	B	80	91	Right-handed alpha
Helix 18	AB9	B	108	119	Right-handed alpha
Helix 19	AC1	B	168	182	Right-handed alpha
Helix 20	AC2	B	184	188	Right-handed 310
Helix 21	AC3	B	203	216	Right-handed alpha
Helix 22	AC4	B	217	222	Right-handed 310
Helix 23	AC5	B	223	238	Right-handed alpha
Helix 24	AC6	B	246	249	Right-handed 310
Helix 25	AC7	B	250	268	Right-handed alpha
Helix 26	AC8	B	278	280	Right-handed 310
Helix 27	AC9	B	292	297	Right-handed alpha
Helix 28	AD1	B	300	322	Right-handed alpha
Helix 29	AD2	B	336	357	Right-handed alpha
Helix 30	AD3	C	24	27	Right-handed 310
Helix 31	AD4	C	28	40	Right-handed alpha
Helix 32	AD5	C	52	57	Right-handed alpha
Helix 33	AD6	C	82	86	Right-handed 310
Helix 34	AD7	C	87	100	Right-handed alpha
Helix 35	AD8	C	101	107	Right-handed alpha
Helix 36	AD9	C	111	116	Right-handed alpha
Helix 37	AE1	D	24	27	Right-handed 310
Helix 38	AE2	D	28	40	Right-handed alpha
Helix 39	AE3	D	52	57	Right-handed alpha
Helix 40	AE4	D	75	78	Right-handed 310
Helix 41	AE5	D	82	86	Right-handed 310
Helix 42	AE6	D	87	101	Right-handed alpha
Helix 43	AE7	D	101	107	Right-handed alpha
Helix 44	AE8	D	111	118	Right-handed alpha

There are 9 sheets in PDB entry 6Y2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	43	49	anti-parallel
Strand 3	A	56	62	anti-parallel
Strand 4	A	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	132	first strand
Strand 2	A	136	143	anti-parallel
Strand 3	A	149	155	anti-parallel
Strand 4	A	160	165	anti-parallel
Strand 5	A	100	105	anti-parallel
Strand 6	B	190	195	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	B	100	105	anti-parallel
Strand 3	B	160	165	anti-parallel
Strand 4	B	149	155	anti-parallel
Strand 5	B	137	143	anti-parallel
Strand 6	B	125	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	290	291	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	49	first strand
Strand 2	B	55	62	anti-parallel
Strand 3	B	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	290	291	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	13	19	anti-parallel
Strand 3	C	46	51	parallel
Strand 4	C	63	69	anti-parallel
Strand 5	C	72	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	13	19	anti-parallel
Strand 3	D	46	51	parallel
Strand 4	D	63	69	anti-parallel
Strand 5	D	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	13	19	anti-parallel
Strand 3	D	46	51	parallel
Strand 4	D	63	69	anti-parallel
Strand 5	D	79	81	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y2P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2P