Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y2Q entry

There are 2 chains in PDB entry 6Y2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3VAL 357
B
 ILE 3VAL 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6Y2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
77 90Right-handed alpha
Helix 4
AA4
A
91 92Right-handed 310
Helix 5
AA5
A
93 98Right-handed 310
Helix 6
AA6
A
108 120Right-handed alpha
Helix 7
AA7
A
168 179Right-handed alpha
Helix 8
AA8
A
180 182Right-handed 310
Helix 9
AA9
A
183 193Right-handed alpha
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
203 215Right-handed alpha
Helix 12
AB3
A
216 219Right-handed 310
Helix 13
AB4
A
223 239Right-handed alpha
Helix 14
AB5
A
246 249Right-handed 310
Helix 15
AB6
A
250 265Right-handed alpha
Helix 16
AB7
A
292 297Right-handed alpha
Helix 17
AB8
A
300 323Right-handed alpha
Helix 18
AB9
A
337 357Right-handed alpha
Helix 19
AC1
B
12 14Right-handed 310
Helix 20
AC2
B
15 27Right-handed alpha
Helix 21
AC3
B
77 90Right-handed alpha
Helix 22
AC4
B
91 92Right-handed 310
Helix 23
AC5
B
93 97Right-handed 310
Helix 24
AC6
B
108 120Right-handed alpha
Helix 25
AC7
B
168 179Right-handed alpha
Helix 26
AC8
B
180 182Right-handed 310
Helix 27
AC9
B
183 193Right-handed alpha
Helix 28
AD1
B
198 202Right-handed 310
Helix 29
AD2
B
203 216Right-handed alpha
Helix 30
AD3
B
217 219Right-handed 310
Helix 31
AD4
B
223 239Right-handed alpha
Helix 32
AD5
B
246 249Right-handed 310
Helix 33
AD6
B
250 267Right-handed alpha
Helix 34
AD7
B
278 280Right-handed 310
Helix 35
AD8
B
292 297Right-handed alpha
Helix 36
AD9
B
300 323Right-handed alpha
Helix 37
AE1
B
337 357Right-handed alpha
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There are 5 sheets in PDB entry 6Y2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
68 71anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
125 132anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
56 62anti-parallel
Strand 4
B
68 71anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
148 155anti-parallel
Strand 4
B
136 143anti-parallel
Strand 5
B
125 132anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
290 291anti-parallel
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