Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y2S entry

There are 2 chains in PDB entry 6Y2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ILE 356
B
 ARG 4ILE 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 6Y2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 14Right-handed 310
Helix 2
AA2
A
15 27Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
93 98Right-handed 310
Helix 5
AA5
A
108 121Right-handed alpha
Helix 6
AA6
A
168 179Right-handed alpha
Helix 7
AA7
A
180 182Right-handed 310
Helix 8
AA8
A
183 193Right-handed alpha
Helix 9
AA9
A
198 202Right-handed 310
Helix 10
AB1
A
203 216Right-handed alpha
Helix 11
AB2
A
217 219Right-handed 310
Helix 12
AB3
A
223 240Right-handed alpha
Helix 13
AB4
A
246 249Right-handed 310
Helix 14
AB5
A
250 267Right-handed alpha
Helix 15
AB6
A
293 296Right-handed 310
Helix 16
AB7
A
300 323Right-handed alpha
Helix 17
AB8
A
336 356Right-handed alpha
Helix 18
AB9
B
12 14Right-handed 310
Helix 19
AC1
B
15 27Right-handed alpha
Helix 20
AC2
B
77 91Right-handed alpha
Helix 21
AC3
B
93 97Right-handed 310
Helix 22
AC4
B
108 121Right-handed alpha
Helix 23
AC5
B
168 179Right-handed alpha
Helix 24
AC6
B
180 182Right-handed 310
Helix 25
AC7
B
183 193Right-handed alpha
Helix 26
AC8
B
198 202Right-handed 310
Helix 27
AC9
B
203 216Right-handed alpha
Helix 28
AD1
B
217 219Right-handed 310
Helix 29
AD2
B
223 240Right-handed alpha
Helix 30
AD3
B
246 249Right-handed 310
Helix 31
AD4
B
250 268Right-handed alpha
Helix 32
AD5
B
278 280Right-handed 310
Helix 33
AD6
B
293 296Right-handed 310
Helix 34
AD7
B
300 323Right-handed alpha
Helix 35
AD8
B
336 354Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6Y2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
68 75anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
136 143anti-parallel
Strand 5
A
125 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
290 291anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
56 62anti-parallel
Strand 4
B
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
149 155anti-parallel
Strand 4
B
136 143anti-parallel
Strand 5
B
125 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
290 291anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il