Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y30


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y30 entry

There are 2 chains in PDB entry 6Y30 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2LEU 295
B
 HIS -4GLY 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6Y30. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
24 42Right-handed alpha
Helix 3
AA3
A
45 60Right-handed alpha
Helix 4
AA4
A
70 88Right-handed alpha
Helix 5
AA5
A
113 128Right-handed alpha
Helix 6
AA6
A
143 155Right-handed alpha
Helix 7
AA7
A
167 182Right-handed alpha
Helix 8
AA8
A
197 213Right-handed alpha
Helix 9
AA9
A
224 227Right-handed 310
Helix 10
AB1
A
228 239Right-handed alpha
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
286 295Right-handed alpha
Helix 13
AB4
B
3 19Right-handed alpha
Helix 14
AB5
B
24 42Right-handed alpha
Helix 15
AB6
B
45 60Right-handed alpha
Helix 16
AB7
B
70 88Right-handed alpha
Helix 17
AB8
B
113 127Right-handed alpha
Helix 18
AB9
B
152 156Right-handed 310
Helix 19
AC1
B
167 182Right-handed alpha
Helix 20
AC2
B
197 213Right-handed alpha
Helix 21
AC3
B
224 227Right-handed 310
Helix 22
AC4
B
228 239Right-handed alpha
Helix 23
AC5
B
255 266Right-handed alpha
Helix 24
AC6
B
286 296Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6Y30. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
132 136parallel
Strand 3
A
186 190parallel
Strand 4
A
102 108parallel
Strand 5
A
216 222parallel
Strand 6
A
243 248parallel
Strand 7
A
270 274parallel
Strand 8
A
282 284anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
186 190parallel
Strand 3
B
102 108parallel
Strand 4
B
216 222parallel
Strand 5
B
244 248parallel
Strand 6
B
270 274parallel
Strand 7
B
282 284anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il