Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y38 entry

There are 4 chains in PDB entry 6Y38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 812PHE 902
B
 PRO 811PHE 902
C
 GLU 3499LEU 3511
D
 GLU 3499LEU 3511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 6Y38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
849 855Right-handed alpha
Helix 2
AA2
A
875 888Right-handed alpha
Helix 3
AA3
B
849 855Right-handed alpha
Helix 4
AA4
B
875 889Right-handed alpha
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There are 4 sheets in PDB entry 6Y38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 819first strand
Strand 2
A
894 900anti-parallel
Strand 3
A
862 866anti-parallel
Strand 4
A
869 870anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 845first strand
Strand 2
A
827 830anti-parallel
Strand 3
C
3508 3511anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
813 819first strand
Strand 2
B
894 900anti-parallel
Strand 3
B
862 866anti-parallel
Strand 4
B
869 870anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
841 845first strand
Strand 2
B
827 830anti-parallel
Strand 3
D
3508 3511anti-parallel
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