Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y39 entry

There are 11 chains in PDB entry 6Y39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 231LEU 258
B
 GLU 43GLU 132
C
 GLY 47ARG 164
D
 GLU 231ARG 259
E
 GLN 44TYR 130
F
 GLY 47PRO 163
G
 GLU 231THR 261
H
 GLN 44TYR 130
I
 GLY 47ARG 164
J
 T 1 T 25
K
 A 1 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6Y39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 255Right-handed alpha
Helix 2
AA2
B
49 61Right-handed alpha
Helix 3
AA3
B
68 97Right-handed alpha
Helix 4
AA4
B
103 114Right-handed alpha
Helix 5
AA5
B
116 132Right-handed alpha
Helix 6
AA6
C
49 54Right-handed alpha
Helix 7
AA7
C
57 77Right-handed alpha
Helix 8
AA8
C
85 98Right-handed alpha
Helix 9
AA9
C
107 135Right-handed alpha
Helix 10
AB1
C
141 150Right-handed alpha
Helix 11
AB2
C
151 159Right-handed 310
Helix 12
AB3
D
240 259Right-handed alpha
Helix 13
AB4
E
49 61Right-handed alpha
Helix 14
AB5
E
68 97Right-handed alpha
Helix 15
AB6
E
103 114Right-handed alpha
Helix 16
AB7
E
116 130Right-handed alpha
Helix 17
AB8
F
49 54Right-handed alpha
Helix 18
AB9
F
58 77Right-handed alpha
Helix 19
AC1
F
85 98Right-handed alpha
Helix 20
AC2
F
107 135Right-handed alpha
Helix 21
AC3
F
141 150Right-handed alpha
Helix 22
AC4
F
151 159Right-handed 310
Helix 23
AC5
G
240 261Right-handed alpha
Helix 24
AC6
H
49 61Right-handed alpha
Helix 25
AC7
H
68 97Right-handed alpha
Helix 26
AC8
H
103 114Right-handed alpha
Helix 27
AC9
H
116 130Right-handed alpha
Helix 28
AD1
I
49 53Right-handed 310
Helix 29
AD2
I
58 77Right-handed alpha
Helix 30
AD3
I
85 98Right-handed alpha
Helix 31
AD4
I
107 135Right-handed alpha
Helix 32
AD5
I
141 151Right-handed alpha
Helix 33
AD6
I
152 159Right-handed 310
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There are 6 sheets in PDB entry 6Y39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
C
139 140parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
C
104 105parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 67first strand
Strand 2
F
139 140parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 102first strand
Strand 2
F
104 105parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
66 67first strand
Strand 2
I
139 140parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
101 102first strand
Strand 2
I
104 105parallel
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