Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Y3P entry

There is 1 chain in PDB entry 6Y3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 322SER 714
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6Y3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 347Right-handed alpha
Helix 2
AA2
A
369 373Right-handed 310
Helix 3
AA3
A
374 381Right-handed alpha
Helix 4
AA4
A
392 397Right-handed alpha
Helix 5
AA5
A
397 411Right-handed alpha
Helix 6
AA6
A
415 419Right-handed 310
Helix 7
AA7
A
431 433Right-handed 310
Helix 8
AA8
A
434 441Right-handed alpha
Helix 9
AA9
A
442 452Right-handed alpha
Helix 10
AB1
A
474 487Right-handed alpha
Helix 11
AB2
A
570 580Right-handed alpha
Helix 12
AB3
A
598 600Right-handed 310
Helix 13
AB4
A
604 629Right-handed alpha
Helix 14
AB5
A
671 689Right-handed alpha
Helix 15
AB6
A
690 695Right-handed 310
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There are 4 sheets in PDB entry 6Y3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
323 327parallel
Strand 3
A
363 367parallel
Strand 4
A
384 386parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
509 515anti-parallel
Strand 3
A
455 460anti-parallel
Strand 4
A
469 472anti-parallel
Strand 5
A
568 569anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
551 554anti-parallel
Strand 3
A
530 539anti-parallel
Strand 4
A
641 650anti-parallel
Strand 5
A
656 662anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
551 554anti-parallel
Strand 3
A
530 539anti-parallel
Strand 4
A
543 547anti-parallel
Strand 5
A
706 711anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il