Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Y3X entry

There are 4 chains in PDB entry 6Y3X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU -5	HIS 368
A	LEU 370	ASP 711
B	GLU -5	HIS 368
B	LEU 370	SER 533

There are158 helices in PDB entry 6Y3X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	30	Right-handed alpha
Helix 2	AA2	A	40	49	Right-handed alpha
Helix 3	AA3	A	62	64	Right-handed 310
Helix 4	AA4	A	65	74	Right-handed alpha
Helix 5	AA5	A	92	97	Right-handed 310
Helix 6	AA6	A	111	128	Right-handed alpha
Helix 7	AA7	A	131	142	Right-handed alpha
Helix 8	AA8	A	158	161	Right-handed 310
Helix 9	AA9	A	162	173	Right-handed alpha
Helix 10	AB1	A	173	179	Right-handed alpha
Helix 11	AB2	A	185	189	Right-handed 310
Helix 12	AB3	A	195	209	Right-handed alpha
Helix 13	AB4	A	219	233	Right-handed alpha
Helix 14	AB5	A	246	254	Right-handed alpha
Helix 15	AB6	A	277	282	Right-handed alpha
Helix 16	AB7	A	282	293	Right-handed alpha
Helix 17	AB8	A	316	324	Right-handed alpha
Helix 18	AB9	A	338	346	Right-handed 310
Helix 19	AC1	A	349	353	Right-handed 310
Helix 20	AC2	A	366	371	Right-handed alpha
Helix 21	AC3	A	387	399	Right-handed alpha
Helix 22	AC4	A	404	419	Right-handed alpha
Helix 23	AC5	A	420	448	Right-handed alpha
Helix 24	AC6	A	512	522	Right-handed alpha
Helix 25	AC7	A	543	564	Right-handed alpha
Helix 26	AC8	A	566	571	Right-handed alpha
Helix 27	AC9	A	571	578	Right-handed alpha
Helix 28	AD1	A	586	602	Right-handed alpha
Helix 29	AD2	A	602	612	Right-handed alpha
Helix 30	AD3	A	620	631	Right-handed alpha
Helix 31	AD4	A	639	642	Right-handed 310
Helix 32	AD5	A	670	687	Right-handed alpha
Helix 33	AD6	B	13	30	Right-handed alpha
Helix 34	AD7	B	40	49	Right-handed alpha
Helix 35	AD8	B	62	64	Right-handed 310
Helix 36	AD9	B	65	74	Right-handed alpha
Helix 37	AE1	B	93	98	Right-handed alpha
Helix 38	AE2	B	111	128	Right-handed alpha
Helix 39	AE3	B	131	142	Right-handed alpha
Helix 40	AE4	B	158	161	Right-handed 310
Helix 41	AE5	B	162	173	Right-handed alpha
Helix 42	AE6	B	173	179	Right-handed alpha
Helix 43	AE7	B	185	189	Right-handed 310
Helix 44	AE8	B	195	209	Right-handed alpha
Helix 45	AE9	B	219	233	Right-handed alpha
Helix 46	AF1	B	246	254	Right-handed alpha
Helix 47	AF2	B	277	282	Right-handed alpha
Helix 48	AF3	B	282	293	Right-handed alpha
Helix 49	AF4	B	316	324	Right-handed alpha
Helix 50	AF5	B	338	346	Right-handed 310
Helix 51	AF6	B	349	353	Right-handed 310
Helix 52	AF7	B	366	371	Right-handed alpha
Helix 53	AF8	B	387	399	Right-handed alpha
Helix 54	AF9	B	404	419	Right-handed alpha
Helix 55	AG1	B	419	448	Right-handed alpha
Helix 56	AG2	B	512	522	Right-handed alpha
Helix 57	AG3	B	543	564	Right-handed alpha
Helix 58	AG4	B	566	571	Right-handed alpha
Helix 59	AG5	B	571	578	Right-handed alpha
Helix 60	AG6	B	586	602	Right-handed alpha
Helix 61	AG7	B	602	612	Right-handed alpha
Helix 62	AG8	B	620	631	Right-handed alpha
Helix 63	AG9	B	639	642	Right-handed 310
Helix 64	AH1	B	670	687	Right-handed alpha
Helix 65	AH2	C	13	30	Right-handed alpha
Helix 66	AH3	C	40	49	Right-handed alpha
Helix 67	AH4	C	62	64	Right-handed 310
Helix 68	AH5	C	65	74	Right-handed alpha
Helix 69	AH6	C	92	97	Right-handed 310
Helix 70	AH7	C	111	128	Right-handed alpha
Helix 71	AH8	C	131	142	Right-handed alpha
Helix 72	AH9	C	158	161	Right-handed 310
Helix 73	AI1	C	162	173	Right-handed alpha
Helix 74	AI2	C	173	179	Right-handed alpha
Helix 75	AI3	C	195	209	Right-handed alpha
Helix 76	AI4	C	219	233	Right-handed alpha
Helix 77	AI5	C	246	254	Right-handed alpha
Helix 78	AI6	C	277	282	Right-handed alpha
Helix 79	AI7	C	282	293	Right-handed alpha
Helix 80	AI8	C	316	324	Right-handed alpha
Helix 81	AI9	C	338	346	Right-handed 310
Helix 82	AJ1	C	349	353	Right-handed 310
Helix 83	AJ2	C	366	371	Right-handed alpha
Helix 84	AJ3	C	387	399	Right-handed alpha
Helix 85	AJ4	C	404	419	Right-handed alpha
Helix 86	AJ5	C	419	448	Right-handed alpha
Helix 87	AJ6	C	512	522	Right-handed alpha
Helix 88	AJ7	C	543	564	Right-handed alpha
Helix 89	AJ8	C	566	571	Right-handed alpha
Helix 90	AJ9	C	571	578	Right-handed alpha
Helix 91	AK1	C	586	602	Right-handed alpha
Helix 92	AK2	C	602	612	Right-handed alpha
Helix 93	AK3	C	620	631	Right-handed alpha
Helix 94	AK4	C	639	642	Right-handed 310
Helix 95	AK5	C	670	686	Right-handed alpha
Helix 96	AK6	D	13	30	Right-handed alpha
Helix 97	AK7	D	40	49	Right-handed alpha
Helix 98	AK8	D	62	64	Right-handed 310
Helix 99	AK9	D	65	74	Right-handed alpha
Helix 100	AL1	D	92	97	Right-handed 310
Helix 101	AL2	D	111	128	Right-handed alpha
Helix 102	AL3	D	131	142	Right-handed alpha
Helix 103	AL4	D	158	161	Right-handed 310
Helix 104	AL5	D	162	173	Right-handed alpha
Helix 105	AL6	D	173	179	Right-handed alpha
Helix 106	AL7	D	195	209	Right-handed alpha
Helix 107	AL8	D	219	233	Right-handed alpha
Helix 108	AL9	D	246	254	Right-handed alpha
Helix 109	AM1	D	277	282	Right-handed alpha
Helix 110	AM2	D	282	293	Right-handed alpha
Helix 111	AM3	D	316	324	Right-handed alpha
Helix 112	AM4	D	338	346	Right-handed 310
Helix 113	AM5	D	349	353	Right-handed 310
Helix 114	AM6	D	366	371	Right-handed alpha
Helix 115	AM7	D	387	399	Right-handed alpha
Helix 116	AM8	D	404	419	Right-handed alpha
Helix 117	AM9	D	419	448	Right-handed alpha
Helix 118	AN1	D	512	522	Right-handed alpha
Helix 119	AN2	D	543	564	Right-handed alpha
Helix 120	AN3	D	566	571	Right-handed alpha
Helix 121	AN4	D	571	578	Right-handed alpha
Helix 122	AN5	D	586	602	Right-handed alpha
Helix 123	AN6	D	602	612	Right-handed alpha
Helix 124	AN7	D	620	631	Right-handed alpha
Helix 125	AN8	D	639	642	Right-handed 310
Helix 126	AN9	D	670	687	Right-handed alpha
Helix 127	AO1	E	13	30	Right-handed alpha
Helix 128	AO2	E	40	49	Right-handed alpha
Helix 129	AO3	E	62	64	Right-handed 310
Helix 130	AO4	E	65	74	Right-handed alpha
Helix 131	AO5	E	92	97	Right-handed 310
Helix 132	AO6	E	111	128	Right-handed alpha
Helix 133	AO7	E	131	142	Right-handed alpha
Helix 134	AO8	E	158	161	Right-handed 310
Helix 135	AO9	E	162	173	Right-handed alpha
Helix 136	AP1	E	173	179	Right-handed alpha
Helix 137	AP2	E	185	189	Right-handed 310
Helix 138	AP3	E	195	209	Right-handed alpha
Helix 139	AP4	E	219	233	Right-handed alpha
Helix 140	AP5	E	246	254	Right-handed alpha
Helix 141	AP6	E	277	282	Right-handed alpha
Helix 142	AP7	E	282	293	Right-handed alpha
Helix 143	AP8	E	316	324	Right-handed alpha
Helix 144	AP9	E	338	346	Right-handed 310
Helix 145	AQ1	E	349	353	Right-handed 310
Helix 146	AQ2	E	366	371	Right-handed alpha
Helix 147	AQ3	E	387	399	Right-handed alpha
Helix 148	AQ4	E	404	419	Right-handed alpha
Helix 149	AQ5	E	420	448	Right-handed alpha
Helix 150	AQ6	E	512	522	Right-handed alpha
Helix 151	AQ7	E	543	564	Right-handed alpha
Helix 152	AQ8	E	566	571	Right-handed alpha
Helix 153	AQ9	E	571	578	Right-handed alpha
Helix 154	AR1	E	586	602	Right-handed alpha
Helix 155	AR2	E	602	612	Right-handed alpha
Helix 156	AR3	E	620	631	Right-handed alpha
Helix 157	AR4	E	639	642	Right-handed 310
Helix 158	AR5	E	670	687	Right-handed alpha

There are 30 sheets in PDB entry 6Y3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	3	7	parallel
Strand 3	A	54	60	parallel
Strand 4	A	80	85	parallel
Strand 5	A	101	106	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	360	365	anti-parallel
Strand 4	A	328	331	parallel
Strand 5	A	302	305	parallel
Strand 6	A	238	242	parallel
Strand 7	A	259	263	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	486	488	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	492	496	anti-parallel
Strand 3	A	533	537	anti-parallel
Strand 4	A	528	529	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	637	first strand
Strand 2	A	705	710	anti-parallel
Strand 3	A	698	699	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	653	first strand
Strand 2	A	693	695	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	3	7	parallel
Strand 3	B	54	60	parallel
Strand 4	B	80	85	parallel
Strand 5	B	101	106	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	217	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	360	365	anti-parallel
Strand 4	B	328	331	parallel
Strand 5	B	302	305	parallel
Strand 6	B	238	242	parallel
Strand 7	B	259	263	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	486	488	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	492	496	anti-parallel
Strand 3	B	533	537	anti-parallel
Strand 4	B	528	529	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	637	first strand
Strand 2	B	705	710	anti-parallel
Strand 3	B	698	699	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	653	first strand
Strand 2	B	693	695	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	3	7	parallel
Strand 3	C	54	60	parallel
Strand 4	C	80	85	parallel
Strand 5	C	101	106	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	217	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	360	365	anti-parallel
Strand 4	C	328	331	parallel
Strand 5	C	302	305	parallel
Strand 6	C	238	242	parallel
Strand 7	C	259	263	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	315	first strand
Strand 2	C	486	488	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	455	first strand
Strand 2	C	492	496	anti-parallel
Strand 3	C	533	537	anti-parallel
Strand 4	C	528	529	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	637	first strand
Strand 2	C	705	710	anti-parallel
Strand 3	C	698	699	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	653	first strand
Strand 2	C	693	695	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	3	7	parallel
Strand 3	D	54	60	parallel
Strand 4	D	80	85	parallel
Strand 5	D	101	106	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	217	first strand
Strand 2	D	378	383	anti-parallel
Strand 3	D	360	365	anti-parallel
Strand 4	D	328	331	parallel
Strand 5	D	302	305	parallel
Strand 6	D	238	242	parallel
Strand 7	D	259	263	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	486	488	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	492	496	anti-parallel
Strand 3	D	533	537	anti-parallel
Strand 4	D	528	529	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	637	first strand
Strand 2	D	705	710	anti-parallel
Strand 3	D	698	699	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	651	653	first strand
Strand 2	D	693	695	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	3	7	parallel
Strand 3	E	54	60	parallel
Strand 4	E	80	85	parallel
Strand 5	E	101	106	parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	217	first strand
Strand 2	E	378	383	anti-parallel
Strand 3	E	360	365	anti-parallel
Strand 4	E	328	331	parallel
Strand 5	E	302	305	parallel
Strand 6	E	238	242	parallel
Strand 7	E	259	263	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	315	first strand
Strand 2	E	486	488	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	454	455	first strand
Strand 2	E	492	496	anti-parallel
Strand 3	E	533	537	anti-parallel
Strand 4	E	528	529	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	633	637	first strand
Strand 2	E	705	710	anti-parallel
Strand 3	E	698	699	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	651	653	first strand
Strand 2	E	693	695	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Y3X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Y3X